Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09585

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_09575 and spoIVCA are separated by 198 nucleotidesspoIVCA and NIAGMN_09585 are separated by 192 nucleotides NIAGMN_09575: NIAGMN_09575 - hypothetical protein, at 1,885,198 to 1,886,514 _09575 NIAGMN_09580: spoIVCA - resolvase, at 1,886,713 to 1,887,282 spoIVCA NIAGMN_09585: NIAGMN_09585 - DUF1643 domain-containing protein, at 1,887,475 to 1,887,942 _09585 Position (kb) 1887 1888Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1886.477 kb on + strandat 1886.590 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.612 kb on - strandat 1886.670 kb on + strandat 1886.670 kb on + strandat 1886.671 kb on - strandat 1886.671 kb on - strandat 1886.679 kb on + strandat 1886.694 kb on - strandat 1886.705 kb on + strandat 1886.705 kb on + strandat 1886.706 kb on - strandat 1886.709 kb on + strandat 1886.710 kb on - strandat 1886.711 kb on + strandat 1886.712 kb on - strandat 1886.787 kb on + strand, within spoIVCAat 1886.787 kb on + strand, within spoIVCAat 1886.882 kb on - strand, within spoIVCAat 1886.895 kb on + strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.172 kb on + strand, within spoIVCAat 1887.173 kb on - strand, within spoIVCAat 1887.282 kb on + strandat 1887.282 kb on + strandat 1887.283 kb on - strandat 1887.283 kb on - strandat 1887.355 kb on + strandat 1887.420 kb on + strandat 1887.420 kb on + strandat 1887.421 kb on - strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.461 kb on + strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.480 kb on + strandat 1887.511 kb on + strandat 1887.512 kb on - strandat 1887.512 kb on - strandat 1887.512 kb on - strandat 1887.553 kb on + strand, within NIAGMN_09585at 1887.553 kb on + strand, within NIAGMN_09585at 1887.553 kb on + strand, within NIAGMN_09585at 1887.554 kb on - strand, within NIAGMN_09585at 1887.584 kb on - strand, within NIAGMN_09585at 1887.584 kb on - strand, within NIAGMN_09585at 1887.627 kb on - strand, within NIAGMN_09585at 1887.650 kb on - strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.660 kb on - strand, within NIAGMN_09585at 1887.660 kb on - strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.739 kb on - strand, within NIAGMN_09585at 1887.744 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.842 kb on + strand, within NIAGMN_09585at 1887.842 kb on + strand, within NIAGMN_09585at 1887.843 kb on - strand, within NIAGMN_09585at 1887.872 kb on + strand, within NIAGMN_09585at 1887.873 kb on - strand, within NIAGMN_09585at 1887.880 kb on - strand, within NIAGMN_09585at 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.930 kb on - strandat 1887.935 kb on + strandat 1887.984 kb on - strandat 1888.016 kb on + strandat 1888.016 kb on + strandat 1888.016 kb on + strandat 1888.017 kb on - strandat 1888.035 kb on + strandat 1888.083 kb on - strandat 1888.128 kb on + strandat 1888.128 kb on + strandat 1888.128 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.180 kb on - strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.194 kb on - strandat 1888.198 kb on - strandat 1888.213 kb on + strandat 1888.213 kb on + strandat 1888.213 kb on + strandat 1888.290 kb on + strandat 1888.298 kb on - strandat 1888.315 kb on + strandat 1888.324 kb on + strandat 1888.324 kb on + strandat 1888.324 kb on + strandat 1888.324 kb on + strandat 1888.325 kb on - strandat 1888.325 kb on - strandat 1888.325 kb on - strandat 1888.325 kb on - strandat 1888.325 kb on - strandat 1888.354 kb on + strandat 1888.354 kb on + strandat 1888.354 kb on + strandat 1888.354 kb on + strandat 1888.354 kb on + strandat 1888.355 kb on - strandat 1888.355 kb on - strandat 1888.355 kb on - strandat 1888.355 kb on - strandat 1888.355 kb on - strandat 1888.361 kb on + strandat 1888.362 kb on - strandat 1888.396 kb on + strandat 1888.397 kb on - strandat 1888.421 kb on + strandat 1888.421 kb on + strandat 1888.422 kb on - strandat 1888.422 kb on - strandat 1888.422 kb on - strandat 1888.422 kb on - strandat 1888.441 kb on + strandat 1888.442 kb on - strandat 1888.469 kb on + strandat 1888.470 kb on - strandat 1888.498 kb on - strandat 1888.562 kb on + strandat 1888.583 kb on + strandat 1888.626 kb on + strandat 1888.626 kb on + strandat 1888.627 kb on - strandat 1888.628 kb on + strandat 1888.652 kb on - strandat 1888.670 kb on - strandat 1888.744 kb on - strandat 1888.744 kb on - strandat 1888.811 kb on + strandat 1888.811 kb on + strandat 1888.812 kb on - strandat 1888.812 kb on - strandat 1888.831 kb on + strandat 1888.866 kb on - strandat 1888.871 kb on + strandat 1888.872 kb on - strandat 1888.872 kb on - strandat 1888.899 kb on + strandat 1888.899 kb on + strandat 1888.900 kb on - strandat 1888.900 kb on - strandat 1888.900 kb on - strandat 1888.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,886,477 + +0.3
1,886,590 + -0.4
1,886,611 + -2.1
1,886,611 + -1.4
1,886,611 + -0.0
1,886,612 - +1.2
1,886,670 + -0.0
1,886,670 + +0.3
1,886,671 - +0.9
1,886,671 - -2.6
1,886,679 + +0.1
1,886,694 - +0.2
1,886,705 + +0.5
1,886,705 + +0.2
1,886,706 - -0.8
1,886,709 + +0.7
1,886,710 - +0.3
1,886,711 + -0.7
1,886,712 - +0.4
1,886,787 + spoIVCA NIAGMN_09580 0.13 -1.8
1,886,787 + spoIVCA NIAGMN_09580 0.13 +1.1
1,886,882 - spoIVCA NIAGMN_09580 0.30 +1.0
1,886,895 + spoIVCA NIAGMN_09580 0.32 -0.5
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.4
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.7
1,886,941 + spoIVCA NIAGMN_09580 0.40 -0.8
1,886,941 + spoIVCA NIAGMN_09580 0.40 +1.2
1,887,006 + spoIVCA NIAGMN_09580 0.51 -2.8
1,887,006 + spoIVCA NIAGMN_09580 0.51 +0.4
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.9
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.1
1,887,091 + spoIVCA NIAGMN_09580 0.66 -0.1
1,887,092 - spoIVCA NIAGMN_09580 0.66 +1.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 -0.6
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.6
1,887,172 + spoIVCA NIAGMN_09580 0.81 +0.1
1,887,173 - spoIVCA NIAGMN_09580 0.81 -0.2
1,887,282 + -2.5
1,887,282 + -2.2
1,887,283 - +0.2
1,887,283 - +0.7
1,887,355 + -0.1
1,887,420 + +0.5
1,887,420 + +0.6
1,887,421 - -2.2
1,887,440 + +1.0
1,887,440 + +0.7
1,887,440 + +0.3
1,887,461 + -0.4
1,887,462 - -0.5
1,887,462 - +0.2
1,887,462 - -1.9
1,887,480 + +0.4
1,887,511 + +1.4
1,887,512 - -0.6
1,887,512 - -0.5
1,887,512 - -2.1
1,887,553 + NIAGMN_09585 0.17 +1.6
1,887,553 + NIAGMN_09585 0.17 -0.1
1,887,553 + NIAGMN_09585 0.17 +1.2
1,887,554 - NIAGMN_09585 0.17 -2.4
1,887,584 - NIAGMN_09585 0.23 +0.7
1,887,584 - NIAGMN_09585 0.23 +0.1
1,887,627 - NIAGMN_09585 0.32 +0.5
1,887,650 - NIAGMN_09585 0.37 -1.2
1,887,659 + NIAGMN_09585 0.39 +1.3
1,887,659 + NIAGMN_09585 0.39 -0.2
1,887,659 + NIAGMN_09585 0.39 +0.8
1,887,659 + NIAGMN_09585 0.39 -0.9
1,887,660 - NIAGMN_09585 0.40 -0.5
1,887,660 - NIAGMN_09585 0.40 -0.2
1,887,661 + NIAGMN_09585 0.40 +0.8
1,887,661 + NIAGMN_09585 0.40 +0.7
1,887,661 + NIAGMN_09585 0.40 +0.1
1,887,661 + NIAGMN_09585 0.40 +0.6
1,887,661 + NIAGMN_09585 0.40 -0.3
1,887,661 + NIAGMN_09585 0.40 +0.5
1,887,662 - NIAGMN_09585 0.40 +0.1
1,887,662 - NIAGMN_09585 0.40 +0.6
1,887,662 - NIAGMN_09585 0.40 +1.1
1,887,662 - NIAGMN_09585 0.40 -1.4
1,887,662 - NIAGMN_09585 0.40 -0.8
1,887,662 - NIAGMN_09585 0.40 +0.5
1,887,662 - NIAGMN_09585 0.40 +0.1
1,887,662 - NIAGMN_09585 0.40 +0.2
1,887,662 - NIAGMN_09585 0.40 -0.2
1,887,662 - NIAGMN_09585 0.40 -0.4
1,887,662 - NIAGMN_09585 0.40 +0.8
1,887,662 - NIAGMN_09585 0.40 -1.6
1,887,662 - NIAGMN_09585 0.40 +0.3
1,887,739 - NIAGMN_09585 0.56 -1.3
1,887,744 + NIAGMN_09585 0.57 +0.8
1,887,755 + NIAGMN_09585 0.60 -0.5
1,887,755 + NIAGMN_09585 0.60 +0.2
1,887,755 + NIAGMN_09585 0.60 +0.8
1,887,755 + NIAGMN_09585 0.60 -0.2
1,887,755 + NIAGMN_09585 0.60 -0.9
1,887,755 + NIAGMN_09585 0.60 +1.3
1,887,756 - NIAGMN_09585 0.60 +0.4
1,887,756 - NIAGMN_09585 0.60 -0.1
1,887,756 - NIAGMN_09585 0.60 -0.4
1,887,756 - NIAGMN_09585 0.60 -0.6
1,887,842 + NIAGMN_09585 0.78 +0.3
1,887,842 + NIAGMN_09585 0.78 -1.4
1,887,843 - NIAGMN_09585 0.79 +0.2
1,887,872 + NIAGMN_09585 0.85 +0.4
1,887,873 - NIAGMN_09585 0.85 +0.0
1,887,880 - NIAGMN_09585 0.87 -0.1
1,887,904 + -2.1
1,887,904 + -1.2
1,887,904 + +0.1
1,887,904 + +2.3
1,887,904 + +0.2
1,887,904 + -0.1
1,887,904 + +1.4
1,887,904 + +1.1
1,887,904 + -0.0
1,887,905 - -0.3
1,887,905 - +0.0
1,887,905 - -0.5
1,887,905 - -0.7
1,887,905 - -1.2
1,887,905 - -0.3
1,887,905 - +0.2
1,887,930 - +0.9
1,887,935 + -0.1
1,887,984 - +0.6
1,888,016 + +0.3
1,888,016 + -0.2
1,888,016 + +0.1
1,888,017 - -0.6
1,888,035 + +0.8
1,888,083 - -0.0
1,888,128 + +0.9
1,888,128 + +0.1
1,888,128 + -2.3
1,888,175 + +1.5
1,888,175 + +0.8
1,888,175 + -0.1
1,888,175 + +1.0
1,888,176 - +0.4
1,888,176 - -2.1
1,888,176 - +0.4
1,888,176 - +1.1
1,888,176 - +0.6
1,888,176 - +0.9
1,888,176 - +1.7
1,888,180 - -1.8
1,888,193 + -0.2
1,888,193 + -0.5
1,888,193 + +0.1
1,888,193 + -0.1
1,888,194 - -0.7
1,888,198 - -1.7
1,888,213 + -0.5
1,888,213 + -0.3
1,888,213 + -1.0
1,888,290 + +1.2
1,888,298 - -0.5
1,888,315 + +0.1
1,888,324 + -0.9
1,888,324 + +0.5
1,888,324 + +0.0
1,888,324 + +0.2
1,888,325 - -0.5
1,888,325 - -1.3
1,888,325 - -0.2
1,888,325 - +0.7
1,888,325 - -1.1
1,888,354 + +0.9
1,888,354 + +0.6
1,888,354 + -1.0
1,888,354 + -1.9
1,888,354 + +1.2
1,888,355 - +1.2
1,888,355 - +0.4
1,888,355 - -0.5
1,888,355 - +0.5
1,888,355 - +0.5
1,888,361 + -0.5
1,888,362 - +0.6
1,888,396 + -0.0
1,888,397 - -0.5
1,888,421 + -0.1
1,888,421 + -0.1
1,888,422 - +0.4
1,888,422 - +0.1
1,888,422 - +0.2
1,888,422 - +0.2
1,888,441 + -1.6
1,888,442 - -2.1
1,888,469 + -1.1
1,888,470 - -0.4
1,888,498 - +0.2
1,888,562 + -2.5
1,888,583 + +0.4
1,888,626 + +0.1
1,888,626 + +1.2
1,888,627 - -0.0
1,888,628 + +0.4
1,888,652 - +0.5
1,888,670 - -0.3
1,888,744 - -0.1
1,888,744 - -0.1
1,888,811 + +0.1
1,888,811 + -2.0
1,888,812 - +0.8
1,888,812 - -1.7
1,888,831 + -0.2
1,888,866 - -0.8
1,888,871 + -1.3
1,888,872 - +0.2
1,888,872 - -0.3
1,888,899 + +0.6
1,888,899 + -0.5
1,888,900 - -0.2
1,888,900 - +0.6
1,888,900 - +0.3
1,888,906 - +0.1

Or see this region's nucleotide sequence