Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_09575 and spoIVCA are separated by 198 nucleotides spoIVCA and NIAGMN_09585 are separated by 192 nucleotides
NIAGMN_09575: NIAGMN_09575 - hypothetical protein, at 1,885,198 to 1,886,514
_09575
NIAGMN_09580: spoIVCA - resolvase, at 1,886,713 to 1,887,282
spoIVCA
NIAGMN_09585: NIAGMN_09585 - DUF1643 domain-containing protein, at 1,887,475 to 1,887,942
_09585
Position (kb)
1887
1888 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1886.477 kb on + strand at 1886.590 kb on + strand at 1886.611 kb on + strand at 1886.611 kb on + strand at 1886.611 kb on + strand at 1886.612 kb on - strand at 1886.670 kb on + strand at 1886.670 kb on + strand at 1886.671 kb on - strand at 1886.671 kb on - strand at 1886.679 kb on + strand at 1886.694 kb on - strand at 1886.705 kb on + strand at 1886.705 kb on + strand at 1886.706 kb on - strand at 1886.709 kb on + strand at 1886.710 kb on - strand at 1886.711 kb on + strand at 1886.712 kb on - strand at 1886.787 kb on + strand, within spoIVCA at 1886.787 kb on + strand, within spoIVCA at 1886.882 kb on - strand, within spoIVCA at 1886.895 kb on + strand, within spoIVCA at 1886.896 kb on - strand, within spoIVCA at 1886.896 kb on - strand, within spoIVCA at 1886.941 kb on + strand, within spoIVCA at 1886.941 kb on + strand, within spoIVCA at 1887.006 kb on + strand, within spoIVCA at 1887.006 kb on + strand, within spoIVCA at 1887.091 kb on + strand, within spoIVCA at 1887.091 kb on + strand, within spoIVCA at 1887.091 kb on + strand, within spoIVCA at 1887.092 kb on - strand, within spoIVCA at 1887.092 kb on - strand, within spoIVCA at 1887.092 kb on - strand, within spoIVCA at 1887.092 kb on - strand, within spoIVCA at 1887.172 kb on + strand, within spoIVCA at 1887.173 kb on - strand, within spoIVCA at 1887.282 kb on + strand at 1887.282 kb on + strand at 1887.283 kb on - strand at 1887.283 kb on - strand at 1887.355 kb on + strand at 1887.420 kb on + strand at 1887.420 kb on + strand at 1887.421 kb on - strand at 1887.440 kb on + strand at 1887.440 kb on + strand at 1887.440 kb on + strand at 1887.461 kb on + strand at 1887.462 kb on - strand at 1887.462 kb on - strand at 1887.462 kb on - strand at 1887.480 kb on + strand at 1887.511 kb on + strand at 1887.512 kb on - strand at 1887.512 kb on - strand at 1887.512 kb on - strand at 1887.553 kb on + strand, within NIAGMN_09585 at 1887.553 kb on + strand, within NIAGMN_09585 at 1887.553 kb on + strand, within NIAGMN_09585 at 1887.554 kb on - strand, within NIAGMN_09585 at 1887.584 kb on - strand, within NIAGMN_09585 at 1887.584 kb on - strand, within NIAGMN_09585 at 1887.627 kb on - strand, within NIAGMN_09585 at 1887.650 kb on - strand, within NIAGMN_09585 at 1887.659 kb on + strand, within NIAGMN_09585 at 1887.659 kb on + strand, within NIAGMN_09585 at 1887.659 kb on + strand, within NIAGMN_09585 at 1887.659 kb on + strand, within NIAGMN_09585 at 1887.660 kb on - strand, within NIAGMN_09585 at 1887.660 kb on - strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.661 kb on + strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.662 kb on - strand, within NIAGMN_09585 at 1887.739 kb on - strand, within NIAGMN_09585 at 1887.744 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.755 kb on + strand, within NIAGMN_09585 at 1887.756 kb on - strand, within NIAGMN_09585 at 1887.756 kb on - strand, within NIAGMN_09585 at 1887.756 kb on - strand, within NIAGMN_09585 at 1887.756 kb on - strand, within NIAGMN_09585 at 1887.842 kb on + strand, within NIAGMN_09585 at 1887.842 kb on + strand, within NIAGMN_09585 at 1887.843 kb on - strand, within NIAGMN_09585 at 1887.872 kb on + strand, within NIAGMN_09585 at 1887.873 kb on - strand, within NIAGMN_09585 at 1887.880 kb on - strand, within NIAGMN_09585 at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.904 kb on + strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.905 kb on - strand at 1887.930 kb on - strand at 1887.935 kb on + strand at 1887.984 kb on - strand at 1888.016 kb on + strand at 1888.016 kb on + strand at 1888.016 kb on + strand at 1888.017 kb on - strand at 1888.035 kb on + strand at 1888.083 kb on - strand at 1888.128 kb on + strand at 1888.128 kb on + strand at 1888.128 kb on + strand at 1888.175 kb on + strand at 1888.175 kb on + strand at 1888.175 kb on + strand at 1888.175 kb on + strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.176 kb on - strand at 1888.180 kb on - strand at 1888.193 kb on + strand at 1888.193 kb on + strand at 1888.193 kb on + strand at 1888.193 kb on + strand at 1888.194 kb on - strand at 1888.198 kb on - strand at 1888.213 kb on + strand at 1888.213 kb on + strand at 1888.213 kb on + strand at 1888.290 kb on + strand at 1888.298 kb on - strand at 1888.315 kb on + strand at 1888.324 kb on + strand at 1888.324 kb on + strand at 1888.324 kb on + strand at 1888.324 kb on + strand at 1888.325 kb on - strand at 1888.325 kb on - strand at 1888.325 kb on - strand at 1888.325 kb on - strand at 1888.325 kb on - strand at 1888.354 kb on + strand at 1888.354 kb on + strand at 1888.354 kb on + strand at 1888.354 kb on + strand at 1888.354 kb on + strand at 1888.355 kb on - strand at 1888.355 kb on - strand at 1888.355 kb on - strand at 1888.355 kb on - strand at 1888.355 kb on - strand at 1888.361 kb on + strand at 1888.362 kb on - strand at 1888.396 kb on + strand at 1888.397 kb on - strand at 1888.421 kb on + strand at 1888.421 kb on + strand at 1888.422 kb on - strand at 1888.422 kb on - strand at 1888.422 kb on - strand at 1888.422 kb on - strand at 1888.441 kb on + strand at 1888.442 kb on - strand at 1888.469 kb on + strand at 1888.470 kb on - strand at 1888.498 kb on - strand at 1888.562 kb on + strand at 1888.583 kb on + strand at 1888.626 kb on + strand at 1888.626 kb on + strand at 1888.627 kb on - strand at 1888.628 kb on + strand at 1888.652 kb on - strand at 1888.670 kb on - strand at 1888.744 kb on - strand at 1888.744 kb on - strand at 1888.811 kb on + strand at 1888.811 kb on + strand at 1888.812 kb on - strand at 1888.812 kb on - strand at 1888.831 kb on + strand at 1888.866 kb on - strand at 1888.871 kb on + strand at 1888.872 kb on - strand at 1888.872 kb on - strand at 1888.899 kb on + strand at 1888.899 kb on + strand at 1888.900 kb on - strand at 1888.900 kb on - strand at 1888.900 kb on - strand at 1888.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,886,477 + +0.3 1,886,590 + -0.4 1,886,611 + -2.1 1,886,611 + -1.4 1,886,611 + -0.0 1,886,612 - +1.2 1,886,670 + -0.0 1,886,670 + +0.3 1,886,671 - +0.9 1,886,671 - -2.6 1,886,679 + +0.1 1,886,694 - +0.2 1,886,705 + +0.5 1,886,705 + +0.2 1,886,706 - -0.8 1,886,709 + +0.7 1,886,710 - +0.3 1,886,711 + -0.7 1,886,712 - +0.4 1,886,787 + spoIVCA NIAGMN_09580 0.13 -1.8 1,886,787 + spoIVCA NIAGMN_09580 0.13 +1.1 1,886,882 - spoIVCA NIAGMN_09580 0.30 +1.0 1,886,895 + spoIVCA NIAGMN_09580 0.32 -0.5 1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.4 1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.7 1,886,941 + spoIVCA NIAGMN_09580 0.40 -0.8 1,886,941 + spoIVCA NIAGMN_09580 0.40 +1.2 1,887,006 + spoIVCA NIAGMN_09580 0.51 -2.8 1,887,006 + spoIVCA NIAGMN_09580 0.51 +0.4 1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.9 1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.1 1,887,091 + spoIVCA NIAGMN_09580 0.66 -0.1 1,887,092 - spoIVCA NIAGMN_09580 0.66 +1.8 1,887,092 - spoIVCA NIAGMN_09580 0.66 -0.6 1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.8 1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.6 1,887,172 + spoIVCA NIAGMN_09580 0.81 +0.1 1,887,173 - spoIVCA NIAGMN_09580 0.81 -0.2 1,887,282 + -2.5 1,887,282 + -2.2 1,887,283 - +0.2 1,887,283 - +0.7 1,887,355 + -0.1 1,887,420 + +0.5 1,887,420 + +0.6 1,887,421 - -2.2 1,887,440 + +1.0 1,887,440 + +0.7 1,887,440 + +0.3 1,887,461 + -0.4 1,887,462 - -0.5 1,887,462 - +0.2 1,887,462 - -1.9 1,887,480 + +0.4 1,887,511 + +1.4 1,887,512 - -0.6 1,887,512 - -0.5 1,887,512 - -2.1 1,887,553 + NIAGMN_09585 0.17 +1.6 1,887,553 + NIAGMN_09585 0.17 -0.1 1,887,553 + NIAGMN_09585 0.17 +1.2 1,887,554 - NIAGMN_09585 0.17 -2.4 1,887,584 - NIAGMN_09585 0.23 +0.7 1,887,584 - NIAGMN_09585 0.23 +0.1 1,887,627 - NIAGMN_09585 0.32 +0.5 1,887,650 - NIAGMN_09585 0.37 -1.2 1,887,659 + NIAGMN_09585 0.39 +1.3 1,887,659 + NIAGMN_09585 0.39 -0.2 1,887,659 + NIAGMN_09585 0.39 +0.8 1,887,659 + NIAGMN_09585 0.39 -0.9 1,887,660 - NIAGMN_09585 0.40 -0.5 1,887,660 - NIAGMN_09585 0.40 -0.2 1,887,661 + NIAGMN_09585 0.40 +0.8 1,887,661 + NIAGMN_09585 0.40 +0.7 1,887,661 + NIAGMN_09585 0.40 +0.1 1,887,661 + NIAGMN_09585 0.40 +0.6 1,887,661 + NIAGMN_09585 0.40 -0.3 1,887,661 + NIAGMN_09585 0.40 +0.5 1,887,662 - NIAGMN_09585 0.40 +0.1 1,887,662 - NIAGMN_09585 0.40 +0.6 1,887,662 - NIAGMN_09585 0.40 +1.1 1,887,662 - NIAGMN_09585 0.40 -1.4 1,887,662 - NIAGMN_09585 0.40 -0.8 1,887,662 - NIAGMN_09585 0.40 +0.5 1,887,662 - NIAGMN_09585 0.40 +0.1 1,887,662 - NIAGMN_09585 0.40 +0.2 1,887,662 - NIAGMN_09585 0.40 -0.2 1,887,662 - NIAGMN_09585 0.40 -0.4 1,887,662 - NIAGMN_09585 0.40 +0.8 1,887,662 - NIAGMN_09585 0.40 -1.6 1,887,662 - NIAGMN_09585 0.40 +0.3 1,887,739 - NIAGMN_09585 0.56 -1.3 1,887,744 + NIAGMN_09585 0.57 +0.8 1,887,755 + NIAGMN_09585 0.60 -0.5 1,887,755 + NIAGMN_09585 0.60 +0.2 1,887,755 + NIAGMN_09585 0.60 +0.8 1,887,755 + NIAGMN_09585 0.60 -0.2 1,887,755 + NIAGMN_09585 0.60 -0.9 1,887,755 + NIAGMN_09585 0.60 +1.3 1,887,756 - NIAGMN_09585 0.60 +0.4 1,887,756 - NIAGMN_09585 0.60 -0.1 1,887,756 - NIAGMN_09585 0.60 -0.4 1,887,756 - NIAGMN_09585 0.60 -0.6 1,887,842 + NIAGMN_09585 0.78 +0.3 1,887,842 + NIAGMN_09585 0.78 -1.4 1,887,843 - NIAGMN_09585 0.79 +0.2 1,887,872 + NIAGMN_09585 0.85 +0.4 1,887,873 - NIAGMN_09585 0.85 +0.0 1,887,880 - NIAGMN_09585 0.87 -0.1 1,887,904 + -2.1 1,887,904 + -1.2 1,887,904 + +0.1 1,887,904 + +2.3 1,887,904 + +0.2 1,887,904 + -0.1 1,887,904 + +1.4 1,887,904 + +1.1 1,887,904 + -0.0 1,887,905 - -0.3 1,887,905 - +0.0 1,887,905 - -0.5 1,887,905 - -0.7 1,887,905 - -1.2 1,887,905 - -0.3 1,887,905 - +0.2 1,887,930 - +0.9 1,887,935 + -0.1 1,887,984 - +0.6 1,888,016 + +0.3 1,888,016 + -0.2 1,888,016 + +0.1 1,888,017 - -0.6 1,888,035 + +0.8 1,888,083 - -0.0 1,888,128 + +0.9 1,888,128 + +0.1 1,888,128 + -2.3 1,888,175 + +1.5 1,888,175 + +0.8 1,888,175 + -0.1 1,888,175 + +1.0 1,888,176 - +0.4 1,888,176 - -2.1 1,888,176 - +0.4 1,888,176 - +1.1 1,888,176 - +0.6 1,888,176 - +0.9 1,888,176 - +1.7 1,888,180 - -1.8 1,888,193 + -0.2 1,888,193 + -0.5 1,888,193 + +0.1 1,888,193 + -0.1 1,888,194 - -0.7 1,888,198 - -1.7 1,888,213 + -0.5 1,888,213 + -0.3 1,888,213 + -1.0 1,888,290 + +1.2 1,888,298 - -0.5 1,888,315 + +0.1 1,888,324 + -0.9 1,888,324 + +0.5 1,888,324 + +0.0 1,888,324 + +0.2 1,888,325 - -0.5 1,888,325 - -1.3 1,888,325 - -0.2 1,888,325 - +0.7 1,888,325 - -1.1 1,888,354 + +0.9 1,888,354 + +0.6 1,888,354 + -1.0 1,888,354 + -1.9 1,888,354 + +1.2 1,888,355 - +1.2 1,888,355 - +0.4 1,888,355 - -0.5 1,888,355 - +0.5 1,888,355 - +0.5 1,888,361 + -0.5 1,888,362 - +0.6 1,888,396 + -0.0 1,888,397 - -0.5 1,888,421 + -0.1 1,888,421 + -0.1 1,888,422 - +0.4 1,888,422 - +0.1 1,888,422 - +0.2 1,888,422 - +0.2 1,888,441 + -1.6 1,888,442 - -2.1 1,888,469 + -1.1 1,888,470 - -0.4 1,888,498 - +0.2 1,888,562 + -2.5 1,888,583 + +0.4 1,888,626 + +0.1 1,888,626 + +1.2 1,888,627 - -0.0 1,888,628 + +0.4 1,888,652 - +0.5 1,888,670 - -0.3 1,888,744 - -0.1 1,888,744 - -0.1 1,888,811 + +0.1 1,888,811 + -2.0 1,888,812 - +0.8 1,888,812 - -1.7 1,888,831 + -0.2 1,888,866 - -0.8 1,888,871 + -1.3 1,888,872 - +0.2 1,888,872 - -0.3 1,888,899 + +0.6 1,888,899 + -0.5 1,888,900 - -0.2 1,888,900 - +0.6 1,888,900 - +0.3 1,888,906 - +0.1
Or see this region's nucleotide sequence