Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09580

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_09575 and spoIVCA are separated by 198 nucleotidesspoIVCA and NIAGMN_09585 are separated by 192 nucleotides NIAGMN_09575: NIAGMN_09575 - hypothetical protein, at 1,885,198 to 1,886,514 _09575 NIAGMN_09580: spoIVCA - resolvase, at 1,886,713 to 1,887,282 spoIVCA NIAGMN_09585: NIAGMN_09585 - DUF1643 domain-containing protein, at 1,887,475 to 1,887,942 _09585 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1885.735 kb on + strand, within NIAGMN_09575at 1885.755 kb on - strand, within NIAGMN_09575at 1885.766 kb on + strand, within NIAGMN_09575at 1885.766 kb on + strand, within NIAGMN_09575at 1885.767 kb on - strand, within NIAGMN_09575at 1885.831 kb on + strand, within NIAGMN_09575at 1885.831 kb on + strand, within NIAGMN_09575at 1885.835 kb on + strand, within NIAGMN_09575at 1885.953 kb on - strand, within NIAGMN_09575at 1885.995 kb on - strand, within NIAGMN_09575at 1885.995 kb on - strand, within NIAGMN_09575at 1886.004 kb on + strand, within NIAGMN_09575at 1886.051 kb on - strand, within NIAGMN_09575at 1886.064 kb on + strand, within NIAGMN_09575at 1886.139 kb on + strand, within NIAGMN_09575at 1886.177 kb on + strand, within NIAGMN_09575at 1886.178 kb on - strand, within NIAGMN_09575at 1886.198 kb on + strand, within NIAGMN_09575at 1886.198 kb on + strand, within NIAGMN_09575at 1886.202 kb on + strand, within NIAGMN_09575at 1886.226 kb on - strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.239 kb on - strand, within NIAGMN_09575at 1886.239 kb on - strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.333 kb on + strand, within NIAGMN_09575at 1886.333 kb on + strand, within NIAGMN_09575at 1886.353 kb on + strand, within NIAGMN_09575at 1886.353 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.393 kb on + strandat 1886.393 kb on + strandat 1886.393 kb on + strandat 1886.394 kb on - strandat 1886.394 kb on - strandat 1886.394 kb on - strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.438 kb on - strandat 1886.438 kb on - strandat 1886.455 kb on - strandat 1886.459 kb on + strandat 1886.477 kb on + strandat 1886.590 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.612 kb on - strandat 1886.670 kb on + strandat 1886.670 kb on + strandat 1886.671 kb on - strandat 1886.671 kb on - strandat 1886.679 kb on + strandat 1886.694 kb on - strandat 1886.705 kb on + strandat 1886.705 kb on + strandat 1886.706 kb on - strandat 1886.709 kb on + strandat 1886.710 kb on - strandat 1886.711 kb on + strandat 1886.712 kb on - strandat 1886.787 kb on + strand, within spoIVCAat 1886.787 kb on + strand, within spoIVCAat 1886.882 kb on - strand, within spoIVCAat 1886.895 kb on + strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.172 kb on + strand, within spoIVCAat 1887.173 kb on - strand, within spoIVCAat 1887.282 kb on + strandat 1887.282 kb on + strandat 1887.283 kb on - strandat 1887.283 kb on - strandat 1887.355 kb on + strandat 1887.420 kb on + strandat 1887.420 kb on + strandat 1887.421 kb on - strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.461 kb on + strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.480 kb on + strandat 1887.511 kb on + strandat 1887.512 kb on - strandat 1887.512 kb on - strandat 1887.512 kb on - strandat 1887.553 kb on + strand, within NIAGMN_09585at 1887.553 kb on + strand, within NIAGMN_09585at 1887.553 kb on + strand, within NIAGMN_09585at 1887.554 kb on - strand, within NIAGMN_09585at 1887.584 kb on - strand, within NIAGMN_09585at 1887.584 kb on - strand, within NIAGMN_09585at 1887.627 kb on - strand, within NIAGMN_09585at 1887.650 kb on - strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.659 kb on + strand, within NIAGMN_09585at 1887.660 kb on - strand, within NIAGMN_09585at 1887.660 kb on - strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.661 kb on + strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.662 kb on - strand, within NIAGMN_09585at 1887.739 kb on - strand, within NIAGMN_09585at 1887.744 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.755 kb on + strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.756 kb on - strand, within NIAGMN_09585at 1887.842 kb on + strand, within NIAGMN_09585at 1887.842 kb on + strand, within NIAGMN_09585at 1887.843 kb on - strand, within NIAGMN_09585at 1887.872 kb on + strand, within NIAGMN_09585at 1887.873 kb on - strand, within NIAGMN_09585at 1887.880 kb on - strand, within NIAGMN_09585at 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.904 kb on + strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.905 kb on - strandat 1887.930 kb on - strandat 1887.935 kb on + strandat 1887.984 kb on - strandat 1888.016 kb on + strandat 1888.016 kb on + strandat 1888.016 kb on + strandat 1888.017 kb on - strandat 1888.035 kb on + strandat 1888.083 kb on - strandat 1888.128 kb on + strandat 1888.128 kb on + strandat 1888.128 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.175 kb on + strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.176 kb on - strandat 1888.180 kb on - strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.193 kb on + strandat 1888.194 kb on - strandat 1888.198 kb on - strandat 1888.213 kb on + strandat 1888.213 kb on + strandat 1888.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,885,735 + NIAGMN_09575 0.41 -0.4
1,885,755 - NIAGMN_09575 0.42 +0.3
1,885,766 + NIAGMN_09575 0.43 -2.8
1,885,766 + NIAGMN_09575 0.43 +1.3
1,885,767 - NIAGMN_09575 0.43 +0.6
1,885,831 + NIAGMN_09575 0.48 +1.3
1,885,831 + NIAGMN_09575 0.48 +1.2
1,885,835 + NIAGMN_09575 0.48 -0.8
1,885,953 - NIAGMN_09575 0.57 +0.3
1,885,995 - NIAGMN_09575 0.61 +1.7
1,885,995 - NIAGMN_09575 0.61 +0.0
1,886,004 + NIAGMN_09575 0.61 -0.2
1,886,051 - NIAGMN_09575 0.65 -0.8
1,886,064 + NIAGMN_09575 0.66 +0.5
1,886,139 + NIAGMN_09575 0.71 +0.6
1,886,177 + NIAGMN_09575 0.74 -0.6
1,886,178 - NIAGMN_09575 0.74 -2.0
1,886,198 + NIAGMN_09575 0.76 +1.1
1,886,198 + NIAGMN_09575 0.76 -0.4
1,886,202 + NIAGMN_09575 0.76 -0.4
1,886,226 - NIAGMN_09575 0.78 -1.1
1,886,238 + NIAGMN_09575 0.79 -0.9
1,886,238 + NIAGMN_09575 0.79 -2.7
1,886,238 + NIAGMN_09575 0.79 -1.2
1,886,238 + NIAGMN_09575 0.79 -1.9
1,886,239 - NIAGMN_09575 0.79 -1.4
1,886,239 - NIAGMN_09575 0.79 +0.2
1,886,240 + NIAGMN_09575 0.79 -0.2
1,886,240 + NIAGMN_09575 0.79 -1.4
1,886,240 + NIAGMN_09575 0.79 +1.2
1,886,252 + NIAGMN_09575 0.80 +1.2
1,886,252 + NIAGMN_09575 0.80 +0.6
1,886,252 + NIAGMN_09575 0.80 -1.2
1,886,333 + NIAGMN_09575 0.86 -0.2
1,886,333 + NIAGMN_09575 0.86 +0.5
1,886,353 + NIAGMN_09575 0.88 +0.6
1,886,353 + NIAGMN_09575 0.88 +0.4
1,886,369 + NIAGMN_09575 0.89 -2.2
1,886,369 + NIAGMN_09575 0.89 -0.6
1,886,369 + NIAGMN_09575 0.89 -1.9
1,886,369 + NIAGMN_09575 0.89 +0.3
1,886,393 + -0.3
1,886,393 + -0.6
1,886,393 + +0.3
1,886,394 - -0.5
1,886,394 - -0.3
1,886,394 - -0.1
1,886,437 + -0.1
1,886,437 + +0.1
1,886,437 + +0.1
1,886,437 + -0.6
1,886,438 - +0.9
1,886,438 - -0.9
1,886,455 - +0.9
1,886,459 + +0.3
1,886,477 + +0.3
1,886,590 + -0.4
1,886,611 + -2.1
1,886,611 + -1.4
1,886,611 + -0.0
1,886,612 - +1.2
1,886,670 + -0.0
1,886,670 + +0.3
1,886,671 - +0.9
1,886,671 - -2.6
1,886,679 + +0.1
1,886,694 - +0.2
1,886,705 + +0.5
1,886,705 + +0.2
1,886,706 - -0.8
1,886,709 + +0.7
1,886,710 - +0.3
1,886,711 + -0.7
1,886,712 - +0.4
1,886,787 + spoIVCA NIAGMN_09580 0.13 -1.8
1,886,787 + spoIVCA NIAGMN_09580 0.13 +1.1
1,886,882 - spoIVCA NIAGMN_09580 0.30 +1.0
1,886,895 + spoIVCA NIAGMN_09580 0.32 -0.5
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.4
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.7
1,886,941 + spoIVCA NIAGMN_09580 0.40 -0.8
1,886,941 + spoIVCA NIAGMN_09580 0.40 +1.2
1,887,006 + spoIVCA NIAGMN_09580 0.51 -2.8
1,887,006 + spoIVCA NIAGMN_09580 0.51 +0.4
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.9
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.1
1,887,091 + spoIVCA NIAGMN_09580 0.66 -0.1
1,887,092 - spoIVCA NIAGMN_09580 0.66 +1.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 -0.6
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.6
1,887,172 + spoIVCA NIAGMN_09580 0.81 +0.1
1,887,173 - spoIVCA NIAGMN_09580 0.81 -0.2
1,887,282 + -2.5
1,887,282 + -2.2
1,887,283 - +0.2
1,887,283 - +0.7
1,887,355 + -0.1
1,887,420 + +0.5
1,887,420 + +0.6
1,887,421 - -2.2
1,887,440 + +1.0
1,887,440 + +0.7
1,887,440 + +0.3
1,887,461 + -0.4
1,887,462 - -0.5
1,887,462 - +0.2
1,887,462 - -1.9
1,887,480 + +0.4
1,887,511 + +1.4
1,887,512 - -0.6
1,887,512 - -0.5
1,887,512 - -2.1
1,887,553 + NIAGMN_09585 0.17 +1.6
1,887,553 + NIAGMN_09585 0.17 -0.1
1,887,553 + NIAGMN_09585 0.17 +1.2
1,887,554 - NIAGMN_09585 0.17 -2.4
1,887,584 - NIAGMN_09585 0.23 +0.7
1,887,584 - NIAGMN_09585 0.23 +0.1
1,887,627 - NIAGMN_09585 0.32 +0.5
1,887,650 - NIAGMN_09585 0.37 -1.2
1,887,659 + NIAGMN_09585 0.39 +1.3
1,887,659 + NIAGMN_09585 0.39 -0.2
1,887,659 + NIAGMN_09585 0.39 +0.8
1,887,659 + NIAGMN_09585 0.39 -0.9
1,887,660 - NIAGMN_09585 0.40 -0.5
1,887,660 - NIAGMN_09585 0.40 -0.2
1,887,661 + NIAGMN_09585 0.40 +0.8
1,887,661 + NIAGMN_09585 0.40 +0.7
1,887,661 + NIAGMN_09585 0.40 +0.1
1,887,661 + NIAGMN_09585 0.40 +0.6
1,887,661 + NIAGMN_09585 0.40 -0.3
1,887,661 + NIAGMN_09585 0.40 +0.5
1,887,662 - NIAGMN_09585 0.40 +0.1
1,887,662 - NIAGMN_09585 0.40 +0.6
1,887,662 - NIAGMN_09585 0.40 +1.1
1,887,662 - NIAGMN_09585 0.40 -1.4
1,887,662 - NIAGMN_09585 0.40 -0.8
1,887,662 - NIAGMN_09585 0.40 +0.5
1,887,662 - NIAGMN_09585 0.40 +0.1
1,887,662 - NIAGMN_09585 0.40 +0.2
1,887,662 - NIAGMN_09585 0.40 -0.2
1,887,662 - NIAGMN_09585 0.40 -0.4
1,887,662 - NIAGMN_09585 0.40 +0.8
1,887,662 - NIAGMN_09585 0.40 -1.6
1,887,662 - NIAGMN_09585 0.40 +0.3
1,887,739 - NIAGMN_09585 0.56 -1.3
1,887,744 + NIAGMN_09585 0.57 +0.8
1,887,755 + NIAGMN_09585 0.60 -0.5
1,887,755 + NIAGMN_09585 0.60 +0.2
1,887,755 + NIAGMN_09585 0.60 +0.8
1,887,755 + NIAGMN_09585 0.60 -0.2
1,887,755 + NIAGMN_09585 0.60 -0.9
1,887,755 + NIAGMN_09585 0.60 +1.3
1,887,756 - NIAGMN_09585 0.60 +0.4
1,887,756 - NIAGMN_09585 0.60 -0.1
1,887,756 - NIAGMN_09585 0.60 -0.4
1,887,756 - NIAGMN_09585 0.60 -0.6
1,887,842 + NIAGMN_09585 0.78 +0.3
1,887,842 + NIAGMN_09585 0.78 -1.4
1,887,843 - NIAGMN_09585 0.79 +0.2
1,887,872 + NIAGMN_09585 0.85 +0.4
1,887,873 - NIAGMN_09585 0.85 +0.0
1,887,880 - NIAGMN_09585 0.87 -0.1
1,887,904 + -2.1
1,887,904 + -1.2
1,887,904 + +0.1
1,887,904 + +2.3
1,887,904 + +0.2
1,887,904 + -0.1
1,887,904 + +1.4
1,887,904 + +1.1
1,887,904 + -0.0
1,887,905 - -0.3
1,887,905 - +0.0
1,887,905 - -0.5
1,887,905 - -0.7
1,887,905 - -1.2
1,887,905 - -0.3
1,887,905 - +0.2
1,887,930 - +0.9
1,887,935 + -0.1
1,887,984 - +0.6
1,888,016 + +0.3
1,888,016 + -0.2
1,888,016 + +0.1
1,888,017 - -0.6
1,888,035 + +0.8
1,888,083 - -0.0
1,888,128 + +0.9
1,888,128 + +0.1
1,888,128 + -2.3
1,888,175 + +1.5
1,888,175 + +0.8
1,888,175 + -0.1
1,888,175 + +1.0
1,888,176 - +0.4
1,888,176 - -2.1
1,888,176 - +0.4
1,888,176 - +1.1
1,888,176 - +0.6
1,888,176 - +0.9
1,888,176 - +1.7
1,888,180 - -1.8
1,888,193 + -0.2
1,888,193 + -0.5
1,888,193 + +0.1
1,888,193 + -0.1
1,888,194 - -0.7
1,888,198 - -1.7
1,888,213 + -0.5
1,888,213 + -0.3
1,888,213 + -1.0

Or see this region's nucleotide sequence