Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09575

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_09570 and NIAGMN_09575 are separated by 151 nucleotidesNIAGMN_09575 and spoIVCA are separated by 198 nucleotidesspoIVCA and NIAGMN_09585 are separated by 192 nucleotides NIAGMN_09570: NIAGMN_09570 - hypothetical protein, at 1,884,273 to 1,885,046 _09570 NIAGMN_09575: NIAGMN_09575 - hypothetical protein, at 1,885,198 to 1,886,514 _09575 NIAGMN_09580: spoIVCA - resolvase, at 1,886,713 to 1,887,282 spoIVCA NIAGMN_09585: NIAGMN_09585 - DUF1643 domain-containing protein, at 1,887,475 to 1,887,942 _09585 Position (kb) 1885 1886 1887Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1884.224 kb on + strandat 1884.224 kb on + strandat 1884.224 kb on + strandat 1884.224 kb on + strandat 1884.225 kb on - strandat 1884.225 kb on - strandat 1884.225 kb on - strandat 1884.225 kb on - strandat 1884.234 kb on + strandat 1884.267 kb on - strandat 1884.290 kb on + strandat 1884.290 kb on + strandat 1884.290 kb on + strandat 1884.291 kb on - strandat 1884.291 kb on - strandat 1884.329 kb on + strandat 1884.329 kb on + strandat 1884.330 kb on - strandat 1884.330 kb on - strandat 1884.330 kb on - strandat 1884.330 kb on - strandat 1884.334 kb on + strandat 1884.335 kb on - strandat 1884.357 kb on + strand, within NIAGMN_09570at 1884.357 kb on + strand, within NIAGMN_09570at 1884.358 kb on - strand, within NIAGMN_09570at 1884.358 kb on - strand, within NIAGMN_09570at 1884.358 kb on - strand, within NIAGMN_09570at 1884.358 kb on - strand, within NIAGMN_09570at 1884.470 kb on + strand, within NIAGMN_09570at 1884.471 kb on - strand, within NIAGMN_09570at 1884.494 kb on - strand, within NIAGMN_09570at 1884.503 kb on + strand, within NIAGMN_09570at 1884.504 kb on - strand, within NIAGMN_09570at 1884.504 kb on - strand, within NIAGMN_09570at 1884.510 kb on + strand, within NIAGMN_09570at 1884.510 kb on + strand, within NIAGMN_09570at 1884.510 kb on + strand, within NIAGMN_09570at 1884.511 kb on - strand, within NIAGMN_09570at 1884.511 kb on - strand, within NIAGMN_09570at 1884.525 kb on + strand, within NIAGMN_09570at 1884.526 kb on - strand, within NIAGMN_09570at 1884.558 kb on - strand, within NIAGMN_09570at 1884.561 kb on - strand, within NIAGMN_09570at 1884.561 kb on - strand, within NIAGMN_09570at 1884.561 kb on - strand, within NIAGMN_09570at 1884.599 kb on + strand, within NIAGMN_09570at 1884.599 kb on + strand, within NIAGMN_09570at 1884.599 kb on + strand, within NIAGMN_09570at 1884.600 kb on - strand, within NIAGMN_09570at 1884.602 kb on - strand, within NIAGMN_09570at 1884.602 kb on - strand, within NIAGMN_09570at 1884.607 kb on + strand, within NIAGMN_09570at 1884.607 kb on + strand, within NIAGMN_09570at 1884.608 kb on - strand, within NIAGMN_09570at 1884.640 kb on - strand, within NIAGMN_09570at 1884.640 kb on - strand, within NIAGMN_09570at 1884.667 kb on - strand, within NIAGMN_09570at 1884.779 kb on + strand, within NIAGMN_09570at 1884.779 kb on + strand, within NIAGMN_09570at 1884.780 kb on - strand, within NIAGMN_09570at 1884.951 kb on + strand, within NIAGMN_09570at 1884.952 kb on - strand, within NIAGMN_09570at 1884.954 kb on - strand, within NIAGMN_09570at 1884.969 kb on + strandat 1884.970 kb on - strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.973 kb on + strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1884.974 kb on - strandat 1885.014 kb on + strandat 1885.014 kb on + strandat 1885.015 kb on - strandat 1885.016 kb on + strandat 1885.016 kb on + strandat 1885.017 kb on - strandat 1885.020 kb on + strandat 1885.021 kb on - strandat 1885.021 kb on - strandat 1885.022 kb on + strandat 1885.025 kb on + strandat 1885.025 kb on + strandat 1885.025 kb on + strandat 1885.025 kb on + strandat 1885.025 kb on + strandat 1885.026 kb on - strandat 1885.026 kb on - strandat 1885.031 kb on + strandat 1885.032 kb on - strandat 1885.052 kb on + strandat 1885.053 kb on - strandat 1885.069 kb on + strandat 1885.070 kb on - strandat 1885.070 kb on - strandat 1885.070 kb on - strandat 1885.088 kb on + strandat 1885.108 kb on + strandat 1885.108 kb on + strandat 1885.116 kb on + strandat 1885.116 kb on + strandat 1885.117 kb on - strandat 1885.117 kb on - strandat 1885.117 kb on - strandat 1885.117 kb on - strandat 1885.117 kb on - strandat 1885.119 kb on - strandat 1885.119 kb on - strandat 1885.141 kb on - strandat 1885.144 kb on + strandat 1885.144 kb on + strandat 1885.144 kb on + strandat 1885.145 kb on - strandat 1885.145 kb on - strandat 1885.145 kb on - strandat 1885.147 kb on - strandat 1885.165 kb on + strandat 1885.166 kb on - strandat 1885.186 kb on + strandat 1885.186 kb on + strandat 1885.186 kb on + strandat 1885.186 kb on + strandat 1885.187 kb on - strandat 1885.212 kb on + strandat 1885.212 kb on + strandat 1885.213 kb on - strandat 1885.218 kb on - strandat 1885.312 kb on + strandat 1885.320 kb on + strandat 1885.320 kb on + strandat 1885.320 kb on + strandat 1885.321 kb on - strandat 1885.394 kb on - strand, within NIAGMN_09575at 1885.425 kb on + strand, within NIAGMN_09575at 1885.426 kb on - strand, within NIAGMN_09575at 1885.435 kb on + strand, within NIAGMN_09575at 1885.460 kb on + strand, within NIAGMN_09575at 1885.460 kb on + strand, within NIAGMN_09575at 1885.512 kb on + strand, within NIAGMN_09575at 1885.578 kb on - strand, within NIAGMN_09575at 1885.580 kb on + strand, within NIAGMN_09575at 1885.604 kb on - strand, within NIAGMN_09575at 1885.735 kb on + strand, within NIAGMN_09575at 1885.755 kb on - strand, within NIAGMN_09575at 1885.766 kb on + strand, within NIAGMN_09575at 1885.766 kb on + strand, within NIAGMN_09575at 1885.767 kb on - strand, within NIAGMN_09575at 1885.831 kb on + strand, within NIAGMN_09575at 1885.831 kb on + strand, within NIAGMN_09575at 1885.835 kb on + strand, within NIAGMN_09575at 1885.953 kb on - strand, within NIAGMN_09575at 1885.995 kb on - strand, within NIAGMN_09575at 1885.995 kb on - strand, within NIAGMN_09575at 1886.004 kb on + strand, within NIAGMN_09575at 1886.051 kb on - strand, within NIAGMN_09575at 1886.064 kb on + strand, within NIAGMN_09575at 1886.139 kb on + strand, within NIAGMN_09575at 1886.177 kb on + strand, within NIAGMN_09575at 1886.178 kb on - strand, within NIAGMN_09575at 1886.198 kb on + strand, within NIAGMN_09575at 1886.198 kb on + strand, within NIAGMN_09575at 1886.202 kb on + strand, within NIAGMN_09575at 1886.226 kb on - strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.238 kb on + strand, within NIAGMN_09575at 1886.239 kb on - strand, within NIAGMN_09575at 1886.239 kb on - strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.240 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.252 kb on + strand, within NIAGMN_09575at 1886.333 kb on + strand, within NIAGMN_09575at 1886.333 kb on + strand, within NIAGMN_09575at 1886.353 kb on + strand, within NIAGMN_09575at 1886.353 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.369 kb on + strand, within NIAGMN_09575at 1886.393 kb on + strandat 1886.393 kb on + strandat 1886.393 kb on + strandat 1886.394 kb on - strandat 1886.394 kb on - strandat 1886.394 kb on - strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.437 kb on + strandat 1886.438 kb on - strandat 1886.438 kb on - strandat 1886.455 kb on - strandat 1886.459 kb on + strandat 1886.477 kb on + strandat 1886.590 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.611 kb on + strandat 1886.612 kb on - strandat 1886.670 kb on + strandat 1886.670 kb on + strandat 1886.671 kb on - strandat 1886.671 kb on - strandat 1886.679 kb on + strandat 1886.694 kb on - strandat 1886.705 kb on + strandat 1886.705 kb on + strandat 1886.706 kb on - strandat 1886.709 kb on + strandat 1886.710 kb on - strandat 1886.711 kb on + strandat 1886.712 kb on - strandat 1886.787 kb on + strand, within spoIVCAat 1886.787 kb on + strand, within spoIVCAat 1886.882 kb on - strand, within spoIVCAat 1886.895 kb on + strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.896 kb on - strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1886.941 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.006 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.091 kb on + strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.092 kb on - strand, within spoIVCAat 1887.172 kb on + strand, within spoIVCAat 1887.173 kb on - strand, within spoIVCAat 1887.282 kb on + strandat 1887.282 kb on + strandat 1887.283 kb on - strandat 1887.283 kb on - strandat 1887.355 kb on + strandat 1887.420 kb on + strandat 1887.420 kb on + strandat 1887.421 kb on - strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.440 kb on + strandat 1887.461 kb on + strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.462 kb on - strandat 1887.480 kb on + strandat 1887.511 kb on + strandat 1887.512 kb on - strandat 1887.512 kb on - strandat 1887.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,884,224 + -0.0
1,884,224 + +0.9
1,884,224 + -1.2
1,884,224 + -0.7
1,884,225 - +1.1
1,884,225 - +0.8
1,884,225 - -0.3
1,884,225 - -0.7
1,884,234 + +0.8
1,884,267 - -0.7
1,884,290 + +0.4
1,884,290 + -0.9
1,884,290 + -2.2
1,884,291 - +0.1
1,884,291 - -2.0
1,884,329 + -0.9
1,884,329 + -0.5
1,884,330 - -0.1
1,884,330 - -0.0
1,884,330 - +0.3
1,884,330 - -0.4
1,884,334 + +0.3
1,884,335 - +0.2
1,884,357 + NIAGMN_09570 0.11 +0.0
1,884,357 + NIAGMN_09570 0.11 +0.2
1,884,358 - NIAGMN_09570 0.11 +0.8
1,884,358 - NIAGMN_09570 0.11 -0.2
1,884,358 - NIAGMN_09570 0.11 -0.2
1,884,358 - NIAGMN_09570 0.11 -1.2
1,884,470 + NIAGMN_09570 0.25 -0.7
1,884,471 - NIAGMN_09570 0.26 +0.2
1,884,494 - NIAGMN_09570 0.29 +0.9
1,884,503 + NIAGMN_09570 0.30 -0.2
1,884,504 - NIAGMN_09570 0.30 +0.1
1,884,504 - NIAGMN_09570 0.30 -1.4
1,884,510 + NIAGMN_09570 0.31 -0.1
1,884,510 + NIAGMN_09570 0.31 +0.2
1,884,510 + NIAGMN_09570 0.31 -0.7
1,884,511 - NIAGMN_09570 0.31 +0.4
1,884,511 - NIAGMN_09570 0.31 +0.4
1,884,525 + NIAGMN_09570 0.33 +0.5
1,884,526 - NIAGMN_09570 0.33 +0.2
1,884,558 - NIAGMN_09570 0.37 -0.5
1,884,561 - NIAGMN_09570 0.37 -0.5
1,884,561 - NIAGMN_09570 0.37 +0.7
1,884,561 - NIAGMN_09570 0.37 +0.2
1,884,599 + NIAGMN_09570 0.42 -1.0
1,884,599 + NIAGMN_09570 0.42 +0.1
1,884,599 + NIAGMN_09570 0.42 +0.1
1,884,600 - NIAGMN_09570 0.42 -0.4
1,884,602 - NIAGMN_09570 0.43 -0.3
1,884,602 - NIAGMN_09570 0.43 +2.6
1,884,607 + NIAGMN_09570 0.43 +0.9
1,884,607 + NIAGMN_09570 0.43 +0.3
1,884,608 - NIAGMN_09570 0.43 +0.0
1,884,640 - NIAGMN_09570 0.47 +0.2
1,884,640 - NIAGMN_09570 0.47 +0.5
1,884,667 - NIAGMN_09570 0.51 -1.3
1,884,779 + NIAGMN_09570 0.65 -0.1
1,884,779 + NIAGMN_09570 0.65 -0.4
1,884,780 - NIAGMN_09570 0.66 -0.5
1,884,951 + NIAGMN_09570 0.88 +0.2
1,884,952 - NIAGMN_09570 0.88 -1.9
1,884,954 - NIAGMN_09570 0.88 -0.5
1,884,969 + +0.2
1,884,970 - +0.5
1,884,973 + -0.4
1,884,973 + -0.6
1,884,973 + +0.5
1,884,973 + -0.9
1,884,973 + +0.8
1,884,973 + -0.3
1,884,973 + +0.0
1,884,973 + +0.3
1,884,974 - -1.7
1,884,974 - +0.3
1,884,974 - +1.1
1,884,974 - -0.2
1,884,974 - +0.9
1,884,974 - +0.7
1,884,974 - -1.8
1,885,014 + +0.6
1,885,014 + -0.4
1,885,015 - +1.2
1,885,016 + -1.4
1,885,016 + +0.0
1,885,017 - -2.0
1,885,020 + +0.2
1,885,021 - +0.3
1,885,021 - -0.0
1,885,022 + -0.3
1,885,025 + -0.3
1,885,025 + -0.5
1,885,025 + +0.2
1,885,025 + +0.4
1,885,025 + +1.6
1,885,026 - -0.5
1,885,026 - -0.3
1,885,031 + -2.5
1,885,032 - +0.5
1,885,052 + -0.2
1,885,053 - -0.7
1,885,069 + +0.5
1,885,070 - -0.5
1,885,070 - +0.3
1,885,070 - +0.9
1,885,088 + -2.6
1,885,108 + -0.7
1,885,108 + -3.4
1,885,116 + +0.1
1,885,116 + -0.1
1,885,117 - -1.5
1,885,117 - +0.3
1,885,117 - -0.1
1,885,117 - +0.1
1,885,117 - +1.2
1,885,119 - +1.0
1,885,119 - +1.6
1,885,141 - +1.1
1,885,144 + +0.6
1,885,144 + -2.2
1,885,144 + +0.5
1,885,145 - -0.8
1,885,145 - +0.6
1,885,145 - +1.2
1,885,147 - -0.8
1,885,165 + -0.5
1,885,166 - +0.0
1,885,186 + -0.5
1,885,186 + +0.7
1,885,186 + +0.0
1,885,186 + -1.1
1,885,187 - +0.3
1,885,212 + -0.6
1,885,212 + -2.2
1,885,213 - +0.9
1,885,218 - +0.8
1,885,312 + -0.2
1,885,320 + +0.4
1,885,320 + +0.7
1,885,320 + +0.3
1,885,321 - -0.1
1,885,394 - NIAGMN_09575 0.15 +1.5
1,885,425 + NIAGMN_09575 0.17 +2.0
1,885,426 - NIAGMN_09575 0.17 -0.8
1,885,435 + NIAGMN_09575 0.18 +0.4
1,885,460 + NIAGMN_09575 0.20 -1.2
1,885,460 + NIAGMN_09575 0.20 -0.5
1,885,512 + NIAGMN_09575 0.24 +0.1
1,885,578 - NIAGMN_09575 0.29 +1.1
1,885,580 + NIAGMN_09575 0.29 -0.0
1,885,604 - NIAGMN_09575 0.31 +0.0
1,885,735 + NIAGMN_09575 0.41 -0.4
1,885,755 - NIAGMN_09575 0.42 +0.3
1,885,766 + NIAGMN_09575 0.43 -2.8
1,885,766 + NIAGMN_09575 0.43 +1.3
1,885,767 - NIAGMN_09575 0.43 +0.6
1,885,831 + NIAGMN_09575 0.48 +1.3
1,885,831 + NIAGMN_09575 0.48 +1.2
1,885,835 + NIAGMN_09575 0.48 -0.8
1,885,953 - NIAGMN_09575 0.57 +0.3
1,885,995 - NIAGMN_09575 0.61 +1.7
1,885,995 - NIAGMN_09575 0.61 +0.0
1,886,004 + NIAGMN_09575 0.61 -0.2
1,886,051 - NIAGMN_09575 0.65 -0.8
1,886,064 + NIAGMN_09575 0.66 +0.5
1,886,139 + NIAGMN_09575 0.71 +0.6
1,886,177 + NIAGMN_09575 0.74 -0.6
1,886,178 - NIAGMN_09575 0.74 -2.0
1,886,198 + NIAGMN_09575 0.76 +1.1
1,886,198 + NIAGMN_09575 0.76 -0.4
1,886,202 + NIAGMN_09575 0.76 -0.4
1,886,226 - NIAGMN_09575 0.78 -1.1
1,886,238 + NIAGMN_09575 0.79 -0.9
1,886,238 + NIAGMN_09575 0.79 -2.7
1,886,238 + NIAGMN_09575 0.79 -1.2
1,886,238 + NIAGMN_09575 0.79 -1.9
1,886,239 - NIAGMN_09575 0.79 -1.4
1,886,239 - NIAGMN_09575 0.79 +0.2
1,886,240 + NIAGMN_09575 0.79 -0.2
1,886,240 + NIAGMN_09575 0.79 -1.4
1,886,240 + NIAGMN_09575 0.79 +1.2
1,886,252 + NIAGMN_09575 0.80 +1.2
1,886,252 + NIAGMN_09575 0.80 +0.6
1,886,252 + NIAGMN_09575 0.80 -1.2
1,886,333 + NIAGMN_09575 0.86 -0.2
1,886,333 + NIAGMN_09575 0.86 +0.5
1,886,353 + NIAGMN_09575 0.88 +0.6
1,886,353 + NIAGMN_09575 0.88 +0.4
1,886,369 + NIAGMN_09575 0.89 -2.2
1,886,369 + NIAGMN_09575 0.89 -0.6
1,886,369 + NIAGMN_09575 0.89 -1.9
1,886,369 + NIAGMN_09575 0.89 +0.3
1,886,393 + -0.3
1,886,393 + -0.6
1,886,393 + +0.3
1,886,394 - -0.5
1,886,394 - -0.3
1,886,394 - -0.1
1,886,437 + -0.1
1,886,437 + +0.1
1,886,437 + +0.1
1,886,437 + -0.6
1,886,438 - +0.9
1,886,438 - -0.9
1,886,455 - +0.9
1,886,459 + +0.3
1,886,477 + +0.3
1,886,590 + -0.4
1,886,611 + -2.1
1,886,611 + -1.4
1,886,611 + -0.0
1,886,612 - +1.2
1,886,670 + -0.0
1,886,670 + +0.3
1,886,671 - +0.9
1,886,671 - -2.6
1,886,679 + +0.1
1,886,694 - +0.2
1,886,705 + +0.5
1,886,705 + +0.2
1,886,706 - -0.8
1,886,709 + +0.7
1,886,710 - +0.3
1,886,711 + -0.7
1,886,712 - +0.4
1,886,787 + spoIVCA NIAGMN_09580 0.13 -1.8
1,886,787 + spoIVCA NIAGMN_09580 0.13 +1.1
1,886,882 - spoIVCA NIAGMN_09580 0.30 +1.0
1,886,895 + spoIVCA NIAGMN_09580 0.32 -0.5
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.4
1,886,896 - spoIVCA NIAGMN_09580 0.32 -0.7
1,886,941 + spoIVCA NIAGMN_09580 0.40 -0.8
1,886,941 + spoIVCA NIAGMN_09580 0.40 +1.2
1,887,006 + spoIVCA NIAGMN_09580 0.51 -2.8
1,887,006 + spoIVCA NIAGMN_09580 0.51 +0.4
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.9
1,887,091 + spoIVCA NIAGMN_09580 0.66 +0.1
1,887,091 + spoIVCA NIAGMN_09580 0.66 -0.1
1,887,092 - spoIVCA NIAGMN_09580 0.66 +1.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 -0.6
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.8
1,887,092 - spoIVCA NIAGMN_09580 0.66 +0.6
1,887,172 + spoIVCA NIAGMN_09580 0.81 +0.1
1,887,173 - spoIVCA NIAGMN_09580 0.81 -0.2
1,887,282 + -2.5
1,887,282 + -2.2
1,887,283 - +0.2
1,887,283 - +0.7
1,887,355 + -0.1
1,887,420 + +0.5
1,887,420 + +0.6
1,887,421 - -2.2
1,887,440 + +1.0
1,887,440 + +0.7
1,887,440 + +0.3
1,887,461 + -0.4
1,887,462 - -0.5
1,887,462 - +0.2
1,887,462 - -1.9
1,887,480 + +0.4
1,887,511 + +1.4
1,887,512 - -0.6
1,887,512 - -0.5
1,887,512 - -2.1

Or see this region's nucleotide sequence