Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09540

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzorA and zorB are separated by 6 nucleotideszorB and zorE are separated by 3 nucleotides NIAGMN_09535: zorA - Zorya protein ZorA, at 1,876,824 to 1,878,476 zorA NIAGMN_09540: zorB - Zorya protein ZorB, at 1,878,483 to 1,879,190 zorB NIAGMN_09545: zorE - Zorya protein ZorE, at 1,879,194 to 1,880,297 zorE Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1877.595 kb on + strand, within zorAat 1877.775 kb on - strand, within zorAat 1877.782 kb on + strand, within zorAat 1877.783 kb on - strand, within zorAat 1877.786 kb on - strand, within zorAat 1877.786 kb on - strand, within zorAat 1877.881 kb on + strand, within zorAat 1877.882 kb on - strand, within zorAat 1878.101 kb on + strand, within zorAat 1878.119 kb on + strand, within zorAat 1878.137 kb on + strand, within zorAat 1878.137 kb on + strand, within zorAat 1878.191 kb on + strand, within zorAat 1878.224 kb on + strand, within zorAat 1878.299 kb on - strand, within zorAat 1878.353 kb on - strandat 1878.396 kb on + strandat 1878.396 kb on + strandat 1878.495 kb on - strandat 1878.590 kb on - strand, within zorBat 1878.590 kb on - strand, within zorBat 1878.600 kb on + strand, within zorBat 1878.614 kb on - strand, within zorBat 1878.712 kb on + strand, within zorBat 1878.779 kb on - strand, within zorBat 1878.878 kb on + strand, within zorBat 1878.911 kb on + strand, within zorBat 1878.911 kb on + strand, within zorBat 1878.957 kb on - strand, within zorBat 1878.959 kb on + strand, within zorBat 1878.980 kb on + strand, within zorBat 1879.115 kb on + strand, within zorBat 1879.205 kb on + strandat 1879.223 kb on + strandat 1879.299 kb on - strandat 1879.371 kb on + strand, within zorEat 1879.371 kb on + strand, within zorEat 1879.372 kb on - strand, within zorEat 1879.397 kb on + strand, within zorEat 1879.436 kb on - strand, within zorEat 1879.537 kb on + strand, within zorEat 1879.893 kb on - strand, within zorEat 1879.958 kb on + strand, within zorEat 1879.960 kb on + strand, within zorEat 1880.021 kb on - strand, within zorE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,877,595 + zorA NIAGMN_09535 0.47 -3.3
1,877,775 - zorA NIAGMN_09535 0.58 +0.6
1,877,782 + zorA NIAGMN_09535 0.58 -0.1
1,877,783 - zorA NIAGMN_09535 0.58 +0.9
1,877,786 - zorA NIAGMN_09535 0.58 -2.5
1,877,786 - zorA NIAGMN_09535 0.58 -1.4
1,877,881 + zorA NIAGMN_09535 0.64 -1.2
1,877,882 - zorA NIAGMN_09535 0.64 -1.2
1,878,101 + zorA NIAGMN_09535 0.77 +0.6
1,878,119 + zorA NIAGMN_09535 0.78 -0.4
1,878,137 + zorA NIAGMN_09535 0.79 +1.3
1,878,137 + zorA NIAGMN_09535 0.79 +1.3
1,878,191 + zorA NIAGMN_09535 0.83 -0.4
1,878,224 + zorA NIAGMN_09535 0.85 -1.1
1,878,299 - zorA NIAGMN_09535 0.89 -1.5
1,878,353 - -1.2
1,878,396 + -0.9
1,878,396 + +1.0
1,878,495 - -1.2
1,878,590 - zorB NIAGMN_09540 0.15 -0.7
1,878,590 - zorB NIAGMN_09540 0.15 +0.1
1,878,600 + zorB NIAGMN_09540 0.17 -0.8
1,878,614 - zorB NIAGMN_09540 0.19 +0.7
1,878,712 + zorB NIAGMN_09540 0.32 +2.6
1,878,779 - zorB NIAGMN_09540 0.42 -1.6
1,878,878 + zorB NIAGMN_09540 0.56 +0.0
1,878,911 + zorB NIAGMN_09540 0.60 -0.2
1,878,911 + zorB NIAGMN_09540 0.60 -0.3
1,878,957 - zorB NIAGMN_09540 0.67 +0.2
1,878,959 + zorB NIAGMN_09540 0.67 +0.1
1,878,980 + zorB NIAGMN_09540 0.70 +0.4
1,879,115 + zorB NIAGMN_09540 0.89 +1.3
1,879,205 + +1.1
1,879,223 + -0.2
1,879,299 - -0.7
1,879,371 + zorE NIAGMN_09545 0.16 -0.8
1,879,371 + zorE NIAGMN_09545 0.16 +2.6
1,879,372 - zorE NIAGMN_09545 0.16 +0.5
1,879,397 + zorE NIAGMN_09545 0.18 -1.4
1,879,436 - zorE NIAGMN_09545 0.22 -0.3
1,879,537 + zorE NIAGMN_09545 0.31 -0.7
1,879,893 - zorE NIAGMN_09545 0.63 +1.2
1,879,958 + zorE NIAGMN_09545 0.69 -0.4
1,879,960 + zorE NIAGMN_09545 0.69 +1.8
1,880,021 - zorE NIAGMN_09545 0.75 -0.1

Or see this region's nucleotide sequence