Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08005

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxB and lpxA overlap by 1 nucleotideslpxA and fabZ are separated by 3 nucleotidesfabZ and lpxD are separated by 104 nucleotides NIAGMN_07995: lpxB - lipid-A-disaccharide synthase, at 1,534,205 to 1,535,353 lpxB NIAGMN_08000: lpxA - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,535,353 to 1,536,141 lpxA NIAGMN_08005: fabZ - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,536,145 to 1,536,600 fabZ NIAGMN_08010: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,536,705 to 1,537,730 lpxD Position (kb) 1536 1537Strain fitness (log2 ratio) -1 0 1at 1536.636 kb on - strandat 1536.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,536,636 - -1.0
1,536,660 - +0.2

Or see this region's nucleotide sequence