Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tilS and yaeR are separated by 64 nucleotides yaeR and ldcC are separated by 56 nucleotides
NIAGMN_07965: tilS - tRNA lysidine(34) synthetase TilS, at 1,525,075 to 1,526,370
tilS
NIAGMN_07970: yaeR - VOC family protein, at 1,526,435 to 1,526,824
yaeR
NIAGMN_07975: ldcC - lysine decarboxylase LdcC, at 1,526,881 to 1,529,022
ldcC
Position (kb)
1526
1527 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1526.389 kb on + strand at 1526.436 kb on + strand at 1526.436 kb on + strand at 1526.445 kb on + strand at 1526.445 kb on + strand at 1526.445 kb on + strand at 1526.446 kb on - strand at 1526.446 kb on - strand at 1526.446 kb on - strand at 1526.582 kb on - strand, within yaeR at 1526.582 kb on - strand, within yaeR at 1526.582 kb on - strand, within yaeR at 1526.665 kb on - strand, within yaeR at 1526.665 kb on - strand, within yaeR at 1526.665 kb on - strand, within yaeR at 1526.665 kb on - strand, within yaeR at 1526.665 kb on - strand, within yaeR at 1526.675 kb on - strand, within yaeR at 1526.755 kb on - strand, within yaeR at 1526.798 kb on - strand at 1526.813 kb on + strand at 1526.825 kb on - strand at 1526.883 kb on - strand at 1526.883 kb on - strand at 1527.008 kb on - strand at 1527.082 kb on - strand at 1527.127 kb on + strand, within ldcC at 1527.138 kb on + strand, within ldcC at 1527.190 kb on - strand, within ldcC at 1527.229 kb on - strand, within ldcC at 1527.229 kb on - strand, within ldcC at 1527.241 kb on - strand, within ldcC at 1527.319 kb on - strand, within ldcC at 1527.344 kb on + strand, within ldcC at 1527.345 kb on - strand, within ldcC at 1527.345 kb on - strand, within ldcC at 1527.376 kb on + strand, within ldcC at 1527.377 kb on - strand, within ldcC at 1527.431 kb on + strand, within ldcC at 1527.573 kb on + strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.574 kb on - strand, within ldcC at 1527.769 kb on - strand, within ldcC at 1527.816 kb on - strand, within ldcC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,526,389 + -0.5 1,526,436 + +0.2 1,526,436 + -0.5 1,526,445 + +0.5 1,526,445 + -0.6 1,526,445 + -0.8 1,526,446 - +0.4 1,526,446 - -0.7 1,526,446 - +0.7 1,526,582 - yaeR NIAGMN_07970 0.38 +0.8 1,526,582 - yaeR NIAGMN_07970 0.38 +0.0 1,526,582 - yaeR NIAGMN_07970 0.38 -1.8 1,526,665 - yaeR NIAGMN_07970 0.59 +0.1 1,526,665 - yaeR NIAGMN_07970 0.59 +0.0 1,526,665 - yaeR NIAGMN_07970 0.59 +0.7 1,526,665 - yaeR NIAGMN_07970 0.59 -0.2 1,526,665 - yaeR NIAGMN_07970 0.59 +0.1 1,526,675 - yaeR NIAGMN_07970 0.62 +0.9 1,526,755 - yaeR NIAGMN_07970 0.82 +0.1 1,526,798 - +0.4 1,526,813 + -0.3 1,526,825 - +0.2 1,526,883 - -0.8 1,526,883 - -1.3 1,527,008 - +0.3 1,527,082 - +0.8 1,527,127 + ldcC NIAGMN_07975 0.11 +0.1 1,527,138 + ldcC NIAGMN_07975 0.12 -1.2 1,527,190 - ldcC NIAGMN_07975 0.14 +0.2 1,527,229 - ldcC NIAGMN_07975 0.16 +0.6 1,527,229 - ldcC NIAGMN_07975 0.16 +0.4 1,527,241 - ldcC NIAGMN_07975 0.17 -0.3 1,527,319 - ldcC NIAGMN_07975 0.20 +0.5 1,527,344 + ldcC NIAGMN_07975 0.22 -1.3 1,527,345 - ldcC NIAGMN_07975 0.22 -0.4 1,527,345 - ldcC NIAGMN_07975 0.22 +0.8 1,527,376 + ldcC NIAGMN_07975 0.23 +2.6 1,527,377 - ldcC NIAGMN_07975 0.23 -0.8 1,527,431 + ldcC NIAGMN_07975 0.26 -1.2 1,527,573 + ldcC NIAGMN_07975 0.32 +0.9 1,527,574 - ldcC NIAGMN_07975 0.32 -0.9 1,527,574 - ldcC NIAGMN_07975 0.32 +0.4 1,527,574 - ldcC NIAGMN_07975 0.32 -1.3 1,527,574 - ldcC NIAGMN_07975 0.32 -0.4 1,527,574 - ldcC NIAGMN_07975 0.32 +0.7 1,527,574 - ldcC NIAGMN_07975 0.32 -1.0 1,527,769 - ldcC NIAGMN_07975 0.41 +1.0 1,527,816 - ldcC NIAGMN_07975 0.44 +0.2
Or see this region's nucleotide sequence