Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhsA and yafF are separated by 2 nucleotides yafF and NIAGMN_07680 are separated by 745 nucleotides
NIAGMN_07670: rhsA - RHS repeat protein, at 1,466,493 to 1,468,253
rhsA
NIAGMN_07675: yafF - ISAs1 family transposase, at 1,468,256 to 1,469,392
yafF
NIAGMN_07680: NIAGMN_07680 - sel1 repeat family protein, at 1,470,138 to 1,470,683
_07680
Position (kb)
1468
1469
1470 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1467.541 kb on + strand, within rhsA at 1467.541 kb on + strand, within rhsA at 1467.542 kb on - strand, within rhsA at 1467.543 kb on + strand, within rhsA at 1467.543 kb on + strand, within rhsA at 1467.544 kb on - strand, within rhsA at 1467.703 kb on + strand, within rhsA at 1467.703 kb on + strand, within rhsA at 1467.742 kb on - strand, within rhsA at 1467.751 kb on + strand, within rhsA at 1467.752 kb on - strand, within rhsA at 1467.784 kb on + strand, within rhsA at 1467.784 kb on + strand, within rhsA at 1467.784 kb on + strand, within rhsA at 1468.055 kb on - strand, within rhsA at 1468.155 kb on + strand at 1468.175 kb on - strand at 1468.175 kb on - strand at 1468.202 kb on + strand at 1468.202 kb on + strand at 1469.212 kb on - strand, within yafF at 1469.255 kb on - strand, within yafF at 1469.883 kb on + strand at 1469.920 kb on - strand at 1469.920 kb on - strand at 1469.920 kb on - strand at 1470.087 kb on - strand at 1470.108 kb on - strand at 1470.212 kb on - strand, within NIAGMN_07680 at 1470.252 kb on - strand, within NIAGMN_07680 at 1470.358 kb on - strand, within NIAGMN_07680 at 1470.368 kb on - strand, within NIAGMN_07680 at 1470.368 kb on - strand, within NIAGMN_07680 at 1470.368 kb on - strand, within NIAGMN_07680
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,467,541 + rhsA NIAGMN_07670 0.60 +0.9 1,467,541 + rhsA NIAGMN_07670 0.60 -0.0 1,467,542 - rhsA NIAGMN_07670 0.60 +0.1 1,467,543 + rhsA NIAGMN_07670 0.60 -0.5 1,467,543 + rhsA NIAGMN_07670 0.60 -0.2 1,467,544 - rhsA NIAGMN_07670 0.60 +0.4 1,467,703 + rhsA NIAGMN_07670 0.69 -1.8 1,467,703 + rhsA NIAGMN_07670 0.69 +0.5 1,467,742 - rhsA NIAGMN_07670 0.71 -0.5 1,467,751 + rhsA NIAGMN_07670 0.71 +0.4 1,467,752 - rhsA NIAGMN_07670 0.71 +0.2 1,467,784 + rhsA NIAGMN_07670 0.73 -0.5 1,467,784 + rhsA NIAGMN_07670 0.73 +0.9 1,467,784 + rhsA NIAGMN_07670 0.73 +0.2 1,468,055 - rhsA NIAGMN_07670 0.89 +0.6 1,468,155 + -2.0 1,468,175 - +0.6 1,468,175 - -0.2 1,468,202 + +2.0 1,468,202 + +2.1 1,469,212 - yafF NIAGMN_07675 0.84 -0.6 1,469,255 - yafF NIAGMN_07675 0.88 -1.1 1,469,883 + -0.9 1,469,920 - +0.8 1,469,920 - -0.2 1,469,920 - +0.9 1,470,087 - -0.4 1,470,108 - -0.5 1,470,212 - NIAGMN_07680 0.14 -0.7 1,470,252 - NIAGMN_07680 0.21 +0.5 1,470,358 - NIAGMN_07680 0.40 -1.1 1,470,368 - NIAGMN_07680 0.42 -0.3 1,470,368 - NIAGMN_07680 0.42 -0.3 1,470,368 - NIAGMN_07680 0.42 +0.9
Or see this region's nucleotide sequence