Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07675

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and yafF are separated by 2 nucleotidesyafF and NIAGMN_07680 are separated by 745 nucleotides NIAGMN_07670: rhsA - RHS repeat protein, at 1,466,493 to 1,468,253 rhsA NIAGMN_07675: yafF - ISAs1 family transposase, at 1,468,256 to 1,469,392 yafF NIAGMN_07680: NIAGMN_07680 - sel1 repeat family protein, at 1,470,138 to 1,470,683 _07680 Position (kb) 1468 1469 1470Strain fitness (log2 ratio) -2 -1 0 1 2at 1467.541 kb on + strand, within rhsAat 1467.541 kb on + strand, within rhsAat 1467.542 kb on - strand, within rhsAat 1467.543 kb on + strand, within rhsAat 1467.543 kb on + strand, within rhsAat 1467.544 kb on - strand, within rhsAat 1467.703 kb on + strand, within rhsAat 1467.703 kb on + strand, within rhsAat 1467.742 kb on - strand, within rhsAat 1467.751 kb on + strand, within rhsAat 1467.752 kb on - strand, within rhsAat 1467.784 kb on + strand, within rhsAat 1467.784 kb on + strand, within rhsAat 1467.784 kb on + strand, within rhsAat 1468.055 kb on - strand, within rhsAat 1468.155 kb on + strandat 1468.175 kb on - strandat 1468.175 kb on - strandat 1468.202 kb on + strandat 1468.202 kb on + strandat 1469.212 kb on - strand, within yafFat 1469.255 kb on - strand, within yafFat 1469.883 kb on + strandat 1469.920 kb on - strandat 1469.920 kb on - strandat 1469.920 kb on - strandat 1470.087 kb on - strandat 1470.108 kb on - strandat 1470.212 kb on - strand, within NIAGMN_07680at 1470.252 kb on - strand, within NIAGMN_07680at 1470.358 kb on - strand, within NIAGMN_07680at 1470.368 kb on - strand, within NIAGMN_07680at 1470.368 kb on - strand, within NIAGMN_07680at 1470.368 kb on - strand, within NIAGMN_07680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,467,541 + rhsA NIAGMN_07670 0.60 +0.9
1,467,541 + rhsA NIAGMN_07670 0.60 -0.0
1,467,542 - rhsA NIAGMN_07670 0.60 +0.1
1,467,543 + rhsA NIAGMN_07670 0.60 -0.5
1,467,543 + rhsA NIAGMN_07670 0.60 -0.2
1,467,544 - rhsA NIAGMN_07670 0.60 +0.4
1,467,703 + rhsA NIAGMN_07670 0.69 -1.8
1,467,703 + rhsA NIAGMN_07670 0.69 +0.5
1,467,742 - rhsA NIAGMN_07670 0.71 -0.5
1,467,751 + rhsA NIAGMN_07670 0.71 +0.4
1,467,752 - rhsA NIAGMN_07670 0.71 +0.2
1,467,784 + rhsA NIAGMN_07670 0.73 -0.5
1,467,784 + rhsA NIAGMN_07670 0.73 +0.9
1,467,784 + rhsA NIAGMN_07670 0.73 +0.2
1,468,055 - rhsA NIAGMN_07670 0.89 +0.6
1,468,155 + -2.0
1,468,175 - +0.6
1,468,175 - -0.2
1,468,202 + +2.0
1,468,202 + +2.1
1,469,212 - yafF NIAGMN_07675 0.84 -0.6
1,469,255 - yafF NIAGMN_07675 0.88 -1.1
1,469,883 + -0.9
1,469,920 - +0.8
1,469,920 - -0.2
1,469,920 - +0.9
1,470,087 - -0.4
1,470,108 - -0.5
1,470,212 - NIAGMN_07680 0.14 -0.7
1,470,252 - NIAGMN_07680 0.21 +0.5
1,470,358 - NIAGMN_07680 0.40 -1.1
1,470,368 - NIAGMN_07680 0.42 -0.3
1,470,368 - NIAGMN_07680 0.42 -0.3
1,470,368 - NIAGMN_07680 0.42 +0.9

Or see this region's nucleotide sequence