Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimB and tra5 are separated by 567 nucleotides tra5 and araC are separated by 41 nucleotides araC and NIAGMN_07450 are separated by 582 nucleotides NIAGMN_07450 and NIAGMN_07455 are separated by 157 nucleotides
NIAGMN_07435: fimB - integrase, at 1,430,057 to 1,431,238
fimB
NIAGMN_07440: tra5 - Transposase InsO and inactivated derivatives, at 1,431,806 to 1,432,159
tra5
NIAGMN_07445: araC - AraC family transcriptional regulator, at 1,432,201 to 1,432,944
araC
NIAGMN_07450: NIAGMN_07450 - tRNA-Xxx, at 1,433,527 to 1,433,610
_07450
NIAGMN_07455: NIAGMN_07455 - GIY-YIG domain-containing protein, at 1,433,768 to 1,434,541
_07455
Position (kb)
1432
1433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1431.243 kb on - strand at 1431.244 kb on + strand at 1431.269 kb on + strand at 1431.269 kb on + strand at 1431.270 kb on - strand at 1431.271 kb on + strand at 1431.271 kb on + strand at 1431.271 kb on + strand at 1431.272 kb on - strand at 1431.322 kb on + strand at 1431.522 kb on + strand at 1431.522 kb on + strand at 1431.522 kb on + strand at 1431.522 kb on + strand at 1431.522 kb on + strand at 1431.523 kb on - strand at 1431.523 kb on - strand at 1431.550 kb on + strand at 1431.550 kb on + strand at 1431.550 kb on + strand at 1431.551 kb on - strand at 1431.551 kb on - strand at 1431.551 kb on - strand at 1431.577 kb on + strand at 1431.577 kb on + strand at 1431.577 kb on + strand at 1431.578 kb on - strand at 1431.581 kb on - strand at 1431.664 kb on + strand at 1431.664 kb on + strand at 1431.664 kb on + strand at 1431.664 kb on + strand at 1431.665 kb on - strand at 1431.665 kb on - strand at 1431.665 kb on - strand at 1431.665 kb on - strand at 1431.753 kb on + strand at 1431.753 kb on + strand at 1431.785 kb on - strand at 1431.811 kb on - strand at 1432.039 kb on - strand, within tra5 at 1432.039 kb on - strand, within tra5 at 1432.039 kb on - strand, within tra5 at 1432.054 kb on + strand, within tra5 at 1432.055 kb on - strand, within tra5 at 1432.079 kb on + strand, within tra5 at 1432.080 kb on - strand, within tra5 at 1432.080 kb on - strand, within tra5 at 1432.158 kb on - strand at 1432.158 kb on - strand at 1432.158 kb on - strand at 1432.158 kb on - strand at 1432.289 kb on + strand, within araC at 1432.290 kb on - strand, within araC at 1432.290 kb on - strand, within araC at 1432.294 kb on - strand, within araC at 1432.294 kb on - strand, within araC at 1432.331 kb on - strand, within araC at 1432.367 kb on + strand, within araC at 1432.461 kb on - strand, within araC at 1433.158 kb on + strand at 1433.159 kb on - strand at 1433.306 kb on + strand at 1433.307 kb on - strand at 1433.467 kb on + strand at 1433.467 kb on + strand at 1433.467 kb on + strand at 1433.569 kb on + strand, within NIAGMN_07450 at 1433.626 kb on + strand at 1433.627 kb on - strand at 1433.701 kb on + strand at 1433.702 kb on - strand at 1433.704 kb on + strand at 1433.705 kb on - strand at 1433.733 kb on + strand at 1433.734 kb on - strand at 1433.735 kb on + strand at 1433.735 kb on + strand at 1433.735 kb on + strand at 1433.735 kb on + strand at 1433.735 kb on + strand at 1433.736 kb on - strand at 1433.759 kb on + strand at 1433.776 kb on + strand at 1433.776 kb on + strand at 1433.797 kb on - strand at 1433.820 kb on + strand at 1433.820 kb on + strand at 1433.820 kb on + strand at 1433.820 kb on + strand at 1433.820 kb on + strand at 1433.821 kb on - strand at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.858 kb on + strand, within NIAGMN_07455 at 1433.859 kb on - strand, within NIAGMN_07455 at 1433.859 kb on - strand, within NIAGMN_07455
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,431,243 - -1.6 1,431,244 + -0.4 1,431,269 + +0.9 1,431,269 + +0.3 1,431,270 - +0.0 1,431,271 + +0.0 1,431,271 + -0.2 1,431,271 + +0.2 1,431,272 - +0.3 1,431,322 + -1.1 1,431,522 + -1.2 1,431,522 + +0.2 1,431,522 + -1.9 1,431,522 + +0.8 1,431,522 + -0.6 1,431,523 - -1.6 1,431,523 - +0.7 1,431,550 + +0.3 1,431,550 + +1.1 1,431,550 + +0.3 1,431,551 - +0.7 1,431,551 - +0.2 1,431,551 - -0.4 1,431,577 + +0.5 1,431,577 + -1.2 1,431,577 + +2.7 1,431,578 - +0.6 1,431,581 - -2.0 1,431,664 + +0.7 1,431,664 + +0.6 1,431,664 + -1.1 1,431,664 + -1.9 1,431,665 - +1.0 1,431,665 - -0.4 1,431,665 - +0.8 1,431,665 - +0.5 1,431,753 + -0.3 1,431,753 + +0.2 1,431,785 - -0.4 1,431,811 - -2.3 1,432,039 - tra5 NIAGMN_07440 0.66 -1.1 1,432,039 - tra5 NIAGMN_07440 0.66 +0.4 1,432,039 - tra5 NIAGMN_07440 0.66 -0.1 1,432,054 + tra5 NIAGMN_07440 0.70 -0.5 1,432,055 - tra5 NIAGMN_07440 0.70 +1.4 1,432,079 + tra5 NIAGMN_07440 0.77 +0.6 1,432,080 - tra5 NIAGMN_07440 0.77 +1.3 1,432,080 - tra5 NIAGMN_07440 0.77 -1.9 1,432,158 - +0.3 1,432,158 - +0.8 1,432,158 - -3.1 1,432,158 - +0.6 1,432,289 + araC NIAGMN_07445 0.12 -0.1 1,432,290 - araC NIAGMN_07445 0.12 +0.4 1,432,290 - araC NIAGMN_07445 0.12 +1.0 1,432,294 - araC NIAGMN_07445 0.12 -0.0 1,432,294 - araC NIAGMN_07445 0.12 -0.7 1,432,331 - araC NIAGMN_07445 0.17 +0.6 1,432,367 + araC NIAGMN_07445 0.22 -0.3 1,432,461 - araC NIAGMN_07445 0.35 -0.8 1,433,158 + +3.0 1,433,159 - -0.2 1,433,306 + -0.1 1,433,307 - -0.5 1,433,467 + +0.0 1,433,467 + +1.8 1,433,467 + -2.9 1,433,569 + NIAGMN_07450 0.50 -0.0 1,433,626 + +0.5 1,433,627 - -0.7 1,433,701 + -0.8 1,433,702 - -0.6 1,433,704 + -1.3 1,433,705 - -0.4 1,433,733 + -1.6 1,433,734 - -0.7 1,433,735 + -2.7 1,433,735 + -0.6 1,433,735 + -0.5 1,433,735 + +0.5 1,433,735 + +0.1 1,433,736 - -0.2 1,433,759 + -0.1 1,433,776 + +0.7 1,433,776 + +1.9 1,433,797 - -1.3 1,433,820 + +0.7 1,433,820 + +0.3 1,433,820 + -0.4 1,433,820 + -0.2 1,433,820 + +0.0 1,433,821 - +0.5 1,433,858 + NIAGMN_07455 0.12 +0.2 1,433,858 + NIAGMN_07455 0.12 -1.9 1,433,858 + NIAGMN_07455 0.12 -0.3 1,433,858 + NIAGMN_07455 0.12 +0.1 1,433,858 + NIAGMN_07455 0.12 -0.8 1,433,858 + NIAGMN_07455 0.12 +1.1 1,433,858 + NIAGMN_07455 0.12 +0.2 1,433,858 + NIAGMN_07455 0.12 -1.5 1,433,859 - NIAGMN_07455 0.12 +0.1 1,433,859 - NIAGMN_07455 0.12 +0.1
Or see this region's nucleotide sequence