Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07445

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimB and tra5 are separated by 567 nucleotidestra5 and araC are separated by 41 nucleotidesaraC and NIAGMN_07450 are separated by 582 nucleotidesNIAGMN_07450 and NIAGMN_07455 are separated by 157 nucleotides NIAGMN_07435: fimB - integrase, at 1,430,057 to 1,431,238 fimB NIAGMN_07440: tra5 - Transposase InsO and inactivated derivatives, at 1,431,806 to 1,432,159 tra5 NIAGMN_07445: araC - AraC family transcriptional regulator, at 1,432,201 to 1,432,944 araC NIAGMN_07450: NIAGMN_07450 - tRNA-Xxx, at 1,433,527 to 1,433,610 _07450 NIAGMN_07455: NIAGMN_07455 - GIY-YIG domain-containing protein, at 1,433,768 to 1,434,541 _07455 Position (kb) 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1431.243 kb on - strandat 1431.244 kb on + strandat 1431.269 kb on + strandat 1431.269 kb on + strandat 1431.270 kb on - strandat 1431.271 kb on + strandat 1431.271 kb on + strandat 1431.271 kb on + strandat 1431.272 kb on - strandat 1431.322 kb on + strandat 1431.522 kb on + strandat 1431.522 kb on + strandat 1431.522 kb on + strandat 1431.522 kb on + strandat 1431.522 kb on + strandat 1431.523 kb on - strandat 1431.523 kb on - strandat 1431.550 kb on + strandat 1431.550 kb on + strandat 1431.550 kb on + strandat 1431.551 kb on - strandat 1431.551 kb on - strandat 1431.551 kb on - strandat 1431.577 kb on + strandat 1431.577 kb on + strandat 1431.577 kb on + strandat 1431.578 kb on - strandat 1431.581 kb on - strandat 1431.664 kb on + strandat 1431.664 kb on + strandat 1431.664 kb on + strandat 1431.664 kb on + strandat 1431.665 kb on - strandat 1431.665 kb on - strandat 1431.665 kb on - strandat 1431.665 kb on - strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.785 kb on - strandat 1431.811 kb on - strandat 1432.039 kb on - strand, within tra5at 1432.039 kb on - strand, within tra5at 1432.039 kb on - strand, within tra5at 1432.054 kb on + strand, within tra5at 1432.055 kb on - strand, within tra5at 1432.079 kb on + strand, within tra5at 1432.080 kb on - strand, within tra5at 1432.080 kb on - strand, within tra5at 1432.158 kb on - strandat 1432.158 kb on - strandat 1432.158 kb on - strandat 1432.158 kb on - strandat 1432.289 kb on + strand, within araCat 1432.290 kb on - strand, within araCat 1432.290 kb on - strand, within araCat 1432.294 kb on - strand, within araCat 1432.294 kb on - strand, within araCat 1432.331 kb on - strand, within araCat 1432.367 kb on + strand, within araCat 1432.461 kb on - strand, within araCat 1433.158 kb on + strandat 1433.159 kb on - strandat 1433.306 kb on + strandat 1433.307 kb on - strandat 1433.467 kb on + strandat 1433.467 kb on + strandat 1433.467 kb on + strandat 1433.569 kb on + strand, within NIAGMN_07450at 1433.626 kb on + strandat 1433.627 kb on - strandat 1433.701 kb on + strandat 1433.702 kb on - strandat 1433.704 kb on + strandat 1433.705 kb on - strandat 1433.733 kb on + strandat 1433.734 kb on - strandat 1433.735 kb on + strandat 1433.735 kb on + strandat 1433.735 kb on + strandat 1433.735 kb on + strandat 1433.735 kb on + strandat 1433.736 kb on - strandat 1433.759 kb on + strandat 1433.776 kb on + strandat 1433.776 kb on + strandat 1433.797 kb on - strandat 1433.820 kb on + strandat 1433.820 kb on + strandat 1433.820 kb on + strandat 1433.820 kb on + strandat 1433.820 kb on + strandat 1433.821 kb on - strandat 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.858 kb on + strand, within NIAGMN_07455at 1433.859 kb on - strand, within NIAGMN_07455at 1433.859 kb on - strand, within NIAGMN_07455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,431,243 - -1.6
1,431,244 + -0.4
1,431,269 + +0.9
1,431,269 + +0.3
1,431,270 - +0.0
1,431,271 + +0.0
1,431,271 + -0.2
1,431,271 + +0.2
1,431,272 - +0.3
1,431,322 + -1.1
1,431,522 + -1.2
1,431,522 + +0.2
1,431,522 + -1.9
1,431,522 + +0.8
1,431,522 + -0.6
1,431,523 - -1.6
1,431,523 - +0.7
1,431,550 + +0.3
1,431,550 + +1.1
1,431,550 + +0.3
1,431,551 - +0.7
1,431,551 - +0.2
1,431,551 - -0.4
1,431,577 + +0.5
1,431,577 + -1.2
1,431,577 + +2.7
1,431,578 - +0.6
1,431,581 - -2.0
1,431,664 + +0.7
1,431,664 + +0.6
1,431,664 + -1.1
1,431,664 + -1.9
1,431,665 - +1.0
1,431,665 - -0.4
1,431,665 - +0.8
1,431,665 - +0.5
1,431,753 + -0.3
1,431,753 + +0.2
1,431,785 - -0.4
1,431,811 - -2.3
1,432,039 - tra5 NIAGMN_07440 0.66 -1.1
1,432,039 - tra5 NIAGMN_07440 0.66 +0.4
1,432,039 - tra5 NIAGMN_07440 0.66 -0.1
1,432,054 + tra5 NIAGMN_07440 0.70 -0.5
1,432,055 - tra5 NIAGMN_07440 0.70 +1.4
1,432,079 + tra5 NIAGMN_07440 0.77 +0.6
1,432,080 - tra5 NIAGMN_07440 0.77 +1.3
1,432,080 - tra5 NIAGMN_07440 0.77 -1.9
1,432,158 - +0.3
1,432,158 - +0.8
1,432,158 - -3.1
1,432,158 - +0.6
1,432,289 + araC NIAGMN_07445 0.12 -0.1
1,432,290 - araC NIAGMN_07445 0.12 +0.4
1,432,290 - araC NIAGMN_07445 0.12 +1.0
1,432,294 - araC NIAGMN_07445 0.12 -0.0
1,432,294 - araC NIAGMN_07445 0.12 -0.7
1,432,331 - araC NIAGMN_07445 0.17 +0.6
1,432,367 + araC NIAGMN_07445 0.22 -0.3
1,432,461 - araC NIAGMN_07445 0.35 -0.8
1,433,158 + +3.0
1,433,159 - -0.2
1,433,306 + -0.1
1,433,307 - -0.5
1,433,467 + +0.0
1,433,467 + +1.8
1,433,467 + -2.9
1,433,569 + NIAGMN_07450 0.50 -0.0
1,433,626 + +0.5
1,433,627 - -0.7
1,433,701 + -0.8
1,433,702 - -0.6
1,433,704 + -1.3
1,433,705 - -0.4
1,433,733 + -1.6
1,433,734 - -0.7
1,433,735 + -2.7
1,433,735 + -0.6
1,433,735 + -0.5
1,433,735 + +0.5
1,433,735 + +0.1
1,433,736 - -0.2
1,433,759 + -0.1
1,433,776 + +0.7
1,433,776 + +1.9
1,433,797 - -1.3
1,433,820 + +0.7
1,433,820 + +0.3
1,433,820 + -0.4
1,433,820 + -0.2
1,433,820 + +0.0
1,433,821 - +0.5
1,433,858 + NIAGMN_07455 0.12 +0.2
1,433,858 + NIAGMN_07455 0.12 -1.9
1,433,858 + NIAGMN_07455 0.12 -0.3
1,433,858 + NIAGMN_07455 0.12 +0.1
1,433,858 + NIAGMN_07455 0.12 -0.8
1,433,858 + NIAGMN_07455 0.12 +1.1
1,433,858 + NIAGMN_07455 0.12 +0.2
1,433,858 + NIAGMN_07455 0.12 -1.5
1,433,859 - NIAGMN_07455 0.12 +0.1
1,433,859 - NIAGMN_07455 0.12 +0.1

Or see this region's nucleotide sequence