Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_07415 and NIAGMN_07420 overlap by 8 nucleotides NIAGMN_07420 and NIAGMN_07425 overlap by 1 nucleotides NIAGMN_07425 and NIAGMN_07430 overlap by 28 nucleotides NIAGMN_07430 and fimB are separated by 3 nucleotides
NIAGMN_07415: NIAGMN_07415 - AAA family ATPase, at 1,427,964 to 1,428,596
_07415
NIAGMN_07420: NIAGMN_07420 - ABC-three component (ABC-3C) system Middle Component 2, at 1,428,589 to 1,429,047
_07420
NIAGMN_07425: NIAGMN_07425 - Phage-associated protein, at 1,429,047 to 1,429,664
_07425
NIAGMN_07430: NIAGMN_07430 - Phage-associated protein, at 1,429,637 to 1,430,053
_07430
NIAGMN_07435: fimB - integrase, at 1,430,057 to 1,431,238
fimB
Position (kb) 1429
1430 Strain fitness (log2 ratio) -2
-1
0
1 at 1428.312 kb on + strand, within NIAGMN_07415 at 1430.127 kb on + strand at 1430.142 kb on + strand at 1430.142 kb on + strand at 1430.142 kb on + strand at 1430.165 kb on - strand at 1430.168 kb on + strand at 1430.228 kb on - strand, within fimB at 1430.279 kb on - strand, within fimB at 1430.279 kb on - strand, within fimB at 1430.279 kb on - strand, within fimB at 1430.284 kb on + strand, within fimB at 1430.350 kb on - strand, within fimB at 1430.355 kb on + strand, within fimB at 1430.355 kb on + strand, within fimB at 1430.355 kb on + strand, within fimB at 1430.393 kb on + strand, within fimB at 1430.409 kb on - strand, within fimB at 1430.465 kb on - strand, within fimB at 1430.528 kb on - strand, within fimB at 1430.549 kb on + strand, within fimB at 1430.563 kb on + strand, within fimB at 1430.564 kb on - strand, within fimB at 1430.564 kb on - strand, within fimB at 1430.574 kb on + strand, within fimB at 1430.582 kb on + strand, within fimB at 1430.583 kb on - strand, within fimB at 1430.583 kb on - strand, within fimB at 1430.603 kb on + strand, within fimB at 1430.604 kb on - strand, within fimB at 1430.618 kb on + strand, within fimB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,428,312 + NIAGMN_07415 0.55 -0.0 1,430,127 + -0.6 1,430,142 + -0.7 1,430,142 + -0.4 1,430,142 + -0.5 1,430,165 - -0.3 1,430,168 + -0.0 1,430,228 - fimB NIAGMN_07435 0.14 +1.1 1,430,279 - fimB NIAGMN_07435 0.19 +1.6 1,430,279 - fimB NIAGMN_07435 0.19 -1.1 1,430,279 - fimB NIAGMN_07435 0.19 -0.1 1,430,284 + fimB NIAGMN_07435 0.19 +1.2 1,430,350 - fimB NIAGMN_07435 0.25 -0.1 1,430,355 + fimB NIAGMN_07435 0.25 -0.4 1,430,355 + fimB NIAGMN_07435 0.25 +0.2 1,430,355 + fimB NIAGMN_07435 0.25 -2.2 1,430,393 + fimB NIAGMN_07435 0.28 +0.8 1,430,409 - fimB NIAGMN_07435 0.30 -0.3 1,430,465 - fimB NIAGMN_07435 0.35 +0.0 1,430,528 - fimB NIAGMN_07435 0.40 -0.3 1,430,549 + fimB NIAGMN_07435 0.42 +0.7 1,430,563 + fimB NIAGMN_07435 0.43 -0.8 1,430,564 - fimB NIAGMN_07435 0.43 -1.4 1,430,564 - fimB NIAGMN_07435 0.43 +0.9 1,430,574 + fimB NIAGMN_07435 0.44 -0.2 1,430,582 + fimB NIAGMN_07435 0.44 -2.5 1,430,583 - fimB NIAGMN_07435 0.45 +0.1 1,430,583 - fimB NIAGMN_07435 0.45 -1.7 1,430,603 + fimB NIAGMN_07435 0.46 -0.4 1,430,604 - fimB NIAGMN_07435 0.46 +1.4 1,430,618 + fimB NIAGMN_07435 0.47 -2.4
Or see this region's nucleotide sequence