Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07120

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_07120 and NIAGMN_07125 are separated by 623 nucleotidesNIAGMN_07125 and tnp-IS3 are separated by 60 nucleotides NIAGMN_07120: NIAGMN_07120 - LuxR family transcriptional regulator, at 1,369,459 to 1,369,626 _07120 NIAGMN_07125: NIAGMN_07125 - hypothetical protein, at 1,370,250 to 1,370,390 _07125 NIAGMN_07130: tnp-IS3 - IS3 family transposase, at 1,370,451 to 1,370,777 tnp-IS3 Position (kb) 1369 1370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1368.519 kb on + strandat 1368.519 kb on + strandat 1368.519 kb on + strandat 1368.554 kb on + strandat 1368.743 kb on + strandat 1368.801 kb on + strandat 1368.824 kb on + strandat 1368.948 kb on + strandat 1368.948 kb on + strandat 1368.949 kb on - strandat 1368.949 kb on - strandat 1368.954 kb on + strandat 1368.954 kb on + strandat 1368.970 kb on + strandat 1368.970 kb on + strandat 1368.971 kb on - strandat 1368.975 kb on + strandat 1368.976 kb on - strandat 1369.063 kb on + strandat 1369.063 kb on + strandat 1369.064 kb on - strandat 1369.064 kb on - strandat 1369.064 kb on - strandat 1369.064 kb on - strandat 1369.074 kb on - strandat 1369.356 kb on + strandat 1369.364 kb on + strandat 1369.435 kb on + strandat 1369.436 kb on - strandat 1369.439 kb on + strandat 1369.439 kb on + strandat 1369.440 kb on - strandat 1369.477 kb on - strand, within NIAGMN_07120at 1369.479 kb on + strand, within NIAGMN_07120at 1369.537 kb on + strand, within NIAGMN_07120at 1369.537 kb on + strand, within NIAGMN_07120at 1369.538 kb on - strand, within NIAGMN_07120at 1369.538 kb on - strand, within NIAGMN_07120at 1369.538 kb on - strand, within NIAGMN_07120at 1369.539 kb on + strand, within NIAGMN_07120at 1369.540 kb on - strand, within NIAGMN_07120at 1369.540 kb on - strand, within NIAGMN_07120at 1369.552 kb on + strand, within NIAGMN_07120at 1369.553 kb on - strand, within NIAGMN_07120at 1369.566 kb on + strand, within NIAGMN_07120at 1369.586 kb on + strand, within NIAGMN_07120at 1369.643 kb on + strandat 1369.643 kb on + strandat 1369.644 kb on - strandat 1369.820 kb on + strandat 1369.820 kb on + strandat 1369.823 kb on + strandat 1369.823 kb on + strandat 1369.823 kb on + strandat 1369.843 kb on - strandat 1369.888 kb on - strandat 1370.024 kb on - strandat 1370.061 kb on - strandat 1370.061 kb on - strandat 1370.066 kb on + strandat 1370.066 kb on + strandat 1370.066 kb on + strandat 1370.067 kb on - strandat 1370.067 kb on - strandat 1370.067 kb on - strandat 1370.077 kb on + strandat 1370.113 kb on + strandat 1370.114 kb on - strandat 1370.138 kb on - strandat 1370.143 kb on + strandat 1370.201 kb on + strandat 1370.249 kb on + strandat 1370.268 kb on + strand, within NIAGMN_07125at 1370.268 kb on + strand, within NIAGMN_07125at 1370.268 kb on + strand, within NIAGMN_07125at 1370.268 kb on + strand, within NIAGMN_07125at 1370.268 kb on + strand, within NIAGMN_07125at 1370.269 kb on - strand, within NIAGMN_07125at 1370.269 kb on - strand, within NIAGMN_07125at 1370.290 kb on + strand, within NIAGMN_07125at 1370.290 kb on + strand, within NIAGMN_07125at 1370.301 kb on + strand, within NIAGMN_07125at 1370.302 kb on - strand, within NIAGMN_07125at 1370.302 kb on - strand, within NIAGMN_07125at 1370.371 kb on - strand, within NIAGMN_07125

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,368,519 + -0.9
1,368,519 + +0.2
1,368,519 + +0.1
1,368,554 + -1.5
1,368,743 + +1.4
1,368,801 + +0.5
1,368,824 + -0.6
1,368,948 + -1.1
1,368,948 + -0.5
1,368,949 - -0.6
1,368,949 - +0.5
1,368,954 + -0.3
1,368,954 + -1.5
1,368,970 + -1.7
1,368,970 + -0.8
1,368,971 - +0.3
1,368,975 + +0.2
1,368,976 - -0.4
1,369,063 + -1.4
1,369,063 + +3.0
1,369,064 - +0.9
1,369,064 - +0.2
1,369,064 - -0.0
1,369,064 - +1.3
1,369,074 - +0.8
1,369,356 + -0.7
1,369,364 + +0.5
1,369,435 + -2.0
1,369,436 - -0.5
1,369,439 + -0.4
1,369,439 + -0.0
1,369,440 - +0.1
1,369,477 - NIAGMN_07120 0.11 -3.9
1,369,479 + NIAGMN_07120 0.12 +0.4
1,369,537 + NIAGMN_07120 0.46 +1.1
1,369,537 + NIAGMN_07120 0.46 -2.4
1,369,538 - NIAGMN_07120 0.47 +0.4
1,369,538 - NIAGMN_07120 0.47 +0.7
1,369,538 - NIAGMN_07120 0.47 +0.4
1,369,539 + NIAGMN_07120 0.48 +0.9
1,369,540 - NIAGMN_07120 0.48 +0.0
1,369,540 - NIAGMN_07120 0.48 -0.4
1,369,552 + NIAGMN_07120 0.55 -1.5
1,369,553 - NIAGMN_07120 0.56 -1.6
1,369,566 + NIAGMN_07120 0.64 +0.3
1,369,586 + NIAGMN_07120 0.76 -0.1
1,369,643 + +0.3
1,369,643 + -0.5
1,369,644 - -0.9
1,369,820 + -0.1
1,369,820 + +0.4
1,369,823 + +1.1
1,369,823 + -1.2
1,369,823 + +1.5
1,369,843 - -0.2
1,369,888 - -0.4
1,370,024 - -2.4
1,370,061 - +0.4
1,370,061 - +0.4
1,370,066 + +0.6
1,370,066 + -0.1
1,370,066 + +1.3
1,370,067 - +1.1
1,370,067 - +0.6
1,370,067 - +1.1
1,370,077 + +0.7
1,370,113 + +0.3
1,370,114 - -1.5
1,370,138 - -0.1
1,370,143 + +0.4
1,370,201 + +0.1
1,370,249 + -1.9
1,370,268 + NIAGMN_07125 0.13 -2.0
1,370,268 + NIAGMN_07125 0.13 +0.1
1,370,268 + NIAGMN_07125 0.13 -0.5
1,370,268 + NIAGMN_07125 0.13 -0.7
1,370,268 + NIAGMN_07125 0.13 +0.8
1,370,269 - NIAGMN_07125 0.13 +2.5
1,370,269 - NIAGMN_07125 0.13 +0.4
1,370,290 + NIAGMN_07125 0.28 +0.3
1,370,290 + NIAGMN_07125 0.28 -0.1
1,370,301 + NIAGMN_07125 0.36 +1.7
1,370,302 - NIAGMN_07125 0.37 +1.3
1,370,302 - NIAGMN_07125 0.37 +0.8
1,370,371 - NIAGMN_07125 0.86 +1.9

Or see this region's nucleotide sequence