Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_07120 and NIAGMN_07125 are separated by 623 nucleotides NIAGMN_07125 and tnp-IS3 are separated by 60 nucleotides
NIAGMN_07120: NIAGMN_07120 - LuxR family transcriptional regulator, at 1,369,459 to 1,369,626
_07120
NIAGMN_07125: NIAGMN_07125 - hypothetical protein, at 1,370,250 to 1,370,390
_07125
NIAGMN_07130: tnp-IS3 - IS3 family transposase, at 1,370,451 to 1,370,777
tnp-IS3
Position (kb)
1369
1370 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1368.519 kb on + strand at 1368.519 kb on + strand at 1368.519 kb on + strand at 1368.554 kb on + strand at 1368.743 kb on + strand at 1368.801 kb on + strand at 1368.824 kb on + strand at 1368.948 kb on + strand at 1368.948 kb on + strand at 1368.949 kb on - strand at 1368.949 kb on - strand at 1368.954 kb on + strand at 1368.954 kb on + strand at 1368.970 kb on + strand at 1368.970 kb on + strand at 1368.971 kb on - strand at 1368.975 kb on + strand at 1368.976 kb on - strand at 1369.063 kb on + strand at 1369.063 kb on + strand at 1369.064 kb on - strand at 1369.064 kb on - strand at 1369.064 kb on - strand at 1369.064 kb on - strand at 1369.074 kb on - strand at 1369.356 kb on + strand at 1369.364 kb on + strand at 1369.435 kb on + strand at 1369.436 kb on - strand at 1369.439 kb on + strand at 1369.439 kb on + strand at 1369.440 kb on - strand at 1369.477 kb on - strand, within NIAGMN_07120 at 1369.479 kb on + strand, within NIAGMN_07120 at 1369.537 kb on + strand, within NIAGMN_07120 at 1369.537 kb on + strand, within NIAGMN_07120 at 1369.538 kb on - strand, within NIAGMN_07120 at 1369.538 kb on - strand, within NIAGMN_07120 at 1369.538 kb on - strand, within NIAGMN_07120 at 1369.539 kb on + strand, within NIAGMN_07120 at 1369.540 kb on - strand, within NIAGMN_07120 at 1369.540 kb on - strand, within NIAGMN_07120 at 1369.552 kb on + strand, within NIAGMN_07120 at 1369.553 kb on - strand, within NIAGMN_07120 at 1369.566 kb on + strand, within NIAGMN_07120 at 1369.586 kb on + strand, within NIAGMN_07120 at 1369.643 kb on + strand at 1369.643 kb on + strand at 1369.644 kb on - strand at 1369.820 kb on + strand at 1369.820 kb on + strand at 1369.823 kb on + strand at 1369.823 kb on + strand at 1369.823 kb on + strand at 1369.843 kb on - strand at 1369.888 kb on - strand at 1370.024 kb on - strand at 1370.061 kb on - strand at 1370.061 kb on - strand at 1370.066 kb on + strand at 1370.066 kb on + strand at 1370.066 kb on + strand at 1370.067 kb on - strand at 1370.067 kb on - strand at 1370.067 kb on - strand at 1370.077 kb on + strand at 1370.113 kb on + strand at 1370.114 kb on - strand at 1370.138 kb on - strand at 1370.143 kb on + strand at 1370.201 kb on + strand at 1370.249 kb on + strand at 1370.268 kb on + strand, within NIAGMN_07125 at 1370.268 kb on + strand, within NIAGMN_07125 at 1370.268 kb on + strand, within NIAGMN_07125 at 1370.268 kb on + strand, within NIAGMN_07125 at 1370.268 kb on + strand, within NIAGMN_07125 at 1370.269 kb on - strand, within NIAGMN_07125 at 1370.269 kb on - strand, within NIAGMN_07125 at 1370.290 kb on + strand, within NIAGMN_07125 at 1370.290 kb on + strand, within NIAGMN_07125 at 1370.301 kb on + strand, within NIAGMN_07125 at 1370.302 kb on - strand, within NIAGMN_07125 at 1370.302 kb on - strand, within NIAGMN_07125 at 1370.371 kb on - strand, within NIAGMN_07125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,368,519 + -0.9 1,368,519 + +0.2 1,368,519 + +0.1 1,368,554 + -1.5 1,368,743 + +1.4 1,368,801 + +0.5 1,368,824 + -0.6 1,368,948 + -1.1 1,368,948 + -0.5 1,368,949 - -0.6 1,368,949 - +0.5 1,368,954 + -0.3 1,368,954 + -1.5 1,368,970 + -1.7 1,368,970 + -0.8 1,368,971 - +0.3 1,368,975 + +0.2 1,368,976 - -0.4 1,369,063 + -1.4 1,369,063 + +3.0 1,369,064 - +0.9 1,369,064 - +0.2 1,369,064 - -0.0 1,369,064 - +1.3 1,369,074 - +0.8 1,369,356 + -0.7 1,369,364 + +0.5 1,369,435 + -2.0 1,369,436 - -0.5 1,369,439 + -0.4 1,369,439 + -0.0 1,369,440 - +0.1 1,369,477 - NIAGMN_07120 0.11 -3.9 1,369,479 + NIAGMN_07120 0.12 +0.4 1,369,537 + NIAGMN_07120 0.46 +1.1 1,369,537 + NIAGMN_07120 0.46 -2.4 1,369,538 - NIAGMN_07120 0.47 +0.4 1,369,538 - NIAGMN_07120 0.47 +0.7 1,369,538 - NIAGMN_07120 0.47 +0.4 1,369,539 + NIAGMN_07120 0.48 +0.9 1,369,540 - NIAGMN_07120 0.48 +0.0 1,369,540 - NIAGMN_07120 0.48 -0.4 1,369,552 + NIAGMN_07120 0.55 -1.5 1,369,553 - NIAGMN_07120 0.56 -1.6 1,369,566 + NIAGMN_07120 0.64 +0.3 1,369,586 + NIAGMN_07120 0.76 -0.1 1,369,643 + +0.3 1,369,643 + -0.5 1,369,644 - -0.9 1,369,820 + -0.1 1,369,820 + +0.4 1,369,823 + +1.1 1,369,823 + -1.2 1,369,823 + +1.5 1,369,843 - -0.2 1,369,888 - -0.4 1,370,024 - -2.4 1,370,061 - +0.4 1,370,061 - +0.4 1,370,066 + +0.6 1,370,066 + -0.1 1,370,066 + +1.3 1,370,067 - +1.1 1,370,067 - +0.6 1,370,067 - +1.1 1,370,077 + +0.7 1,370,113 + +0.3 1,370,114 - -1.5 1,370,138 - -0.1 1,370,143 + +0.4 1,370,201 + +0.1 1,370,249 + -1.9 1,370,268 + NIAGMN_07125 0.13 -2.0 1,370,268 + NIAGMN_07125 0.13 +0.1 1,370,268 + NIAGMN_07125 0.13 -0.5 1,370,268 + NIAGMN_07125 0.13 -0.7 1,370,268 + NIAGMN_07125 0.13 +0.8 1,370,269 - NIAGMN_07125 0.13 +2.5 1,370,269 - NIAGMN_07125 0.13 +0.4 1,370,290 + NIAGMN_07125 0.28 +0.3 1,370,290 + NIAGMN_07125 0.28 -0.1 1,370,301 + NIAGMN_07125 0.36 +1.7 1,370,302 - NIAGMN_07125 0.37 +1.3 1,370,302 - NIAGMN_07125 0.37 +0.8 1,370,371 - NIAGMN_07125 0.86 +1.9
Or see this region's nucleotide sequence