Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahD and yahC are separated by 462 nucleotides yahC and NIAGMN_07070 are separated by 91 nucleotides NIAGMN_07070 and NIAGMN_07075 overlap by 40 nucleotides
NIAGMN_07060: yahD - Putative ankyrin repeat protein YahD, at 1,353,349 to 1,353,954
yahD
NIAGMN_07065: yahC - Uncharacterized protein YahC, at 1,354,417 to 1,354,719
yahC
NIAGMN_07070: NIAGMN_07070 - HTH lysR-type domain-containing protein, at 1,354,811 to 1,355,521
_07070
NIAGMN_07075: NIAGMN_07075 - Putative transcriptional regulator LYSR-type, at 1,355,482 to 1,355,742
_07075
Position (kb)
1354
1355 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1353.433 kb on - strand, within yahD at 1353.469 kb on + strand, within yahD at 1353.593 kb on - strand, within yahD at 1353.601 kb on + strand, within yahD at 1353.602 kb on - strand, within yahD at 1353.859 kb on - strand, within yahD at 1354.097 kb on + strand at 1354.148 kb on + strand at 1354.156 kb on + strand at 1354.158 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.172 kb on - strand at 1354.172 kb on - strand at 1354.270 kb on + strand at 1354.270 kb on + strand at 1354.496 kb on + strand, within yahC at 1354.496 kb on + strand, within yahC at 1354.625 kb on + strand, within yahC at 1354.767 kb on + strand at 1354.767 kb on + strand at 1354.788 kb on + strand at 1354.788 kb on + strand at 1354.789 kb on - strand at 1354.810 kb on - strand at 1354.918 kb on + strand, within NIAGMN_07070 at 1354.919 kb on - strand, within NIAGMN_07070 at 1354.922 kb on + strand, within NIAGMN_07070 at 1354.922 kb on + strand, within NIAGMN_07070 at 1354.923 kb on - strand, within NIAGMN_07070 at 1355.074 kb on + strand, within NIAGMN_07070 at 1355.210 kb on + strand, within NIAGMN_07070 at 1355.210 kb on + strand, within NIAGMN_07070 at 1355.210 kb on + strand, within NIAGMN_07070 at 1355.211 kb on - strand, within NIAGMN_07070 at 1355.234 kb on - strand, within NIAGMN_07070 at 1355.301 kb on - strand, within NIAGMN_07070 at 1355.404 kb on - strand, within NIAGMN_07070 at 1355.409 kb on + strand, within NIAGMN_07070 at 1355.409 kb on + strand, within NIAGMN_07070 at 1355.409 kb on + strand, within NIAGMN_07070 at 1355.439 kb on + strand, within NIAGMN_07070 at 1355.439 kb on + strand, within NIAGMN_07070 at 1355.548 kb on + strand, within NIAGMN_07075 at 1355.548 kb on + strand, within NIAGMN_07075 at 1355.549 kb on - strand, within NIAGMN_07075 at 1355.549 kb on - strand, within NIAGMN_07075 at 1355.650 kb on - strand, within NIAGMN_07075 at 1355.673 kb on + strand, within NIAGMN_07075 at 1355.699 kb on + strand, within NIAGMN_07075 at 1355.702 kb on + strand, within NIAGMN_07075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,353,433 - yahD NIAGMN_07060 0.14 +1.6 1,353,469 + yahD NIAGMN_07060 0.20 +0.8 1,353,593 - yahD NIAGMN_07060 0.40 +0.4 1,353,601 + yahD NIAGMN_07060 0.42 -1.6 1,353,602 - yahD NIAGMN_07060 0.42 -0.1 1,353,859 - yahD NIAGMN_07060 0.84 -0.6 1,354,097 + -0.0 1,354,148 + -1.4 1,354,156 + +0.0 1,354,158 + -1.0 1,354,171 + +0.5 1,354,171 + -0.3 1,354,171 + -0.4 1,354,171 + -0.3 1,354,171 + -0.7 1,354,171 + -0.3 1,354,172 - +0.1 1,354,172 - -0.8 1,354,270 + +0.5 1,354,270 + +0.7 1,354,496 + yahC NIAGMN_07065 0.26 +0.1 1,354,496 + yahC NIAGMN_07065 0.26 -0.0 1,354,625 + yahC NIAGMN_07065 0.69 +1.0 1,354,767 + +0.6 1,354,767 + -0.0 1,354,788 + +0.4 1,354,788 + +1.0 1,354,789 - +0.2 1,354,810 - -0.8 1,354,918 + NIAGMN_07070 0.15 +0.9 1,354,919 - NIAGMN_07070 0.15 -0.1 1,354,922 + NIAGMN_07070 0.16 +0.1 1,354,922 + NIAGMN_07070 0.16 +2.5 1,354,923 - NIAGMN_07070 0.16 -1.0 1,355,074 + NIAGMN_07070 0.37 -1.3 1,355,210 + NIAGMN_07070 0.56 +1.4 1,355,210 + NIAGMN_07070 0.56 +0.2 1,355,210 + NIAGMN_07070 0.56 -2.2 1,355,211 - NIAGMN_07070 0.56 +0.5 1,355,234 - NIAGMN_07070 0.59 -0.5 1,355,301 - NIAGMN_07070 0.69 -0.3 1,355,404 - NIAGMN_07070 0.83 +1.0 1,355,409 + NIAGMN_07070 0.84 -0.5 1,355,409 + NIAGMN_07070 0.84 +1.0 1,355,409 + NIAGMN_07070 0.84 -0.5 1,355,439 + NIAGMN_07070 0.88 +0.4 1,355,439 + NIAGMN_07070 0.88 +1.0 1,355,548 + NIAGMN_07075 0.25 +1.7 1,355,548 + NIAGMN_07075 0.25 -0.2 1,355,549 - NIAGMN_07075 0.26 +0.6 1,355,549 - NIAGMN_07075 0.26 -1.8 1,355,650 - NIAGMN_07075 0.64 -2.7 1,355,673 + NIAGMN_07075 0.73 +0.8 1,355,699 + NIAGMN_07075 0.83 +1.9 1,355,702 + NIAGMN_07075 0.84 -0.5
Or see this region's nucleotide sequence