Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahF and yahE overlap by 11 nucleotides yahE and yahD are separated by 39 nucleotides yahD and yahC are separated by 462 nucleotides yahC and NIAGMN_07070 are separated by 91 nucleotides
NIAGMN_07050: yahF - Uncharacterized protein YahF, at 1,350,909 to 1,352,456
yahF
NIAGMN_07055: yahE - Uncharacterized protein YahE, at 1,352,446 to 1,353,309
yahE
NIAGMN_07060: yahD - Putative ankyrin repeat protein YahD, at 1,353,349 to 1,353,954
yahD
NIAGMN_07065: yahC - Uncharacterized protein YahC, at 1,354,417 to 1,354,719
yahC
NIAGMN_07070: NIAGMN_07070 - HTH lysR-type domain-containing protein, at 1,354,811 to 1,355,521
_07070
Position (kb)
1353
1354 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1352.396 kb on + strand at 1352.397 kb on - strand at 1352.397 kb on - strand at 1352.542 kb on - strand, within yahE at 1352.659 kb on + strand, within yahE at 1352.812 kb on - strand, within yahE at 1353.058 kb on + strand, within yahE at 1353.059 kb on - strand, within yahE at 1353.085 kb on - strand, within yahE at 1353.085 kb on - strand, within yahE at 1353.108 kb on + strand, within yahE at 1353.109 kb on - strand, within yahE at 1353.350 kb on + strand at 1353.351 kb on - strand at 1353.351 kb on - strand at 1353.433 kb on - strand, within yahD at 1353.469 kb on + strand, within yahD at 1353.593 kb on - strand, within yahD at 1353.601 kb on + strand, within yahD at 1353.602 kb on - strand, within yahD at 1353.859 kb on - strand, within yahD at 1354.097 kb on + strand at 1354.148 kb on + strand at 1354.156 kb on + strand at 1354.158 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.172 kb on - strand at 1354.172 kb on - strand at 1354.270 kb on + strand at 1354.270 kb on + strand at 1354.496 kb on + strand, within yahC at 1354.496 kb on + strand, within yahC at 1354.625 kb on + strand, within yahC at 1354.767 kb on + strand at 1354.767 kb on + strand at 1354.788 kb on + strand at 1354.788 kb on + strand at 1354.789 kb on - strand at 1354.810 kb on - strand at 1354.918 kb on + strand, within NIAGMN_07070 at 1354.919 kb on - strand, within NIAGMN_07070 at 1354.922 kb on + strand, within NIAGMN_07070 at 1354.922 kb on + strand, within NIAGMN_07070 at 1354.923 kb on - strand, within NIAGMN_07070
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,352,396 + -1.2 1,352,397 - -0.3 1,352,397 - +0.2 1,352,542 - yahE NIAGMN_07055 0.11 -0.3 1,352,659 + yahE NIAGMN_07055 0.25 -1.5 1,352,812 - yahE NIAGMN_07055 0.42 -0.4 1,353,058 + yahE NIAGMN_07055 0.71 +1.6 1,353,059 - yahE NIAGMN_07055 0.71 +0.6 1,353,085 - yahE NIAGMN_07055 0.74 -0.7 1,353,085 - yahE NIAGMN_07055 0.74 -0.4 1,353,108 + yahE NIAGMN_07055 0.77 -1.8 1,353,109 - yahE NIAGMN_07055 0.77 +1.0 1,353,350 + +0.6 1,353,351 - +0.4 1,353,351 - +0.2 1,353,433 - yahD NIAGMN_07060 0.14 +1.6 1,353,469 + yahD NIAGMN_07060 0.20 +0.8 1,353,593 - yahD NIAGMN_07060 0.40 +0.4 1,353,601 + yahD NIAGMN_07060 0.42 -1.6 1,353,602 - yahD NIAGMN_07060 0.42 -0.1 1,353,859 - yahD NIAGMN_07060 0.84 -0.6 1,354,097 + -0.0 1,354,148 + -1.4 1,354,156 + +0.0 1,354,158 + -1.0 1,354,171 + +0.5 1,354,171 + -0.3 1,354,171 + -0.4 1,354,171 + -0.3 1,354,171 + -0.7 1,354,171 + -0.3 1,354,172 - +0.1 1,354,172 - -0.8 1,354,270 + +0.5 1,354,270 + +0.7 1,354,496 + yahC NIAGMN_07065 0.26 +0.1 1,354,496 + yahC NIAGMN_07065 0.26 -0.0 1,354,625 + yahC NIAGMN_07065 0.69 +1.0 1,354,767 + +0.6 1,354,767 + -0.0 1,354,788 + +0.4 1,354,788 + +1.0 1,354,789 - +0.2 1,354,810 - -0.8 1,354,918 + NIAGMN_07070 0.15 +0.9 1,354,919 - NIAGMN_07070 0.15 -0.1 1,354,922 + NIAGMN_07070 0.16 +0.1 1,354,922 + NIAGMN_07070 0.16 +2.5 1,354,923 - NIAGMN_07070 0.16 -1.0
Or see this region's nucleotide sequence