Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07060

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyahF and yahE overlap by 11 nucleotidesyahE and yahD are separated by 39 nucleotidesyahD and yahC are separated by 462 nucleotidesyahC and NIAGMN_07070 are separated by 91 nucleotides NIAGMN_07050: yahF - Uncharacterized protein YahF, at 1,350,909 to 1,352,456 yahF NIAGMN_07055: yahE - Uncharacterized protein YahE, at 1,352,446 to 1,353,309 yahE NIAGMN_07060: yahD - Putative ankyrin repeat protein YahD, at 1,353,349 to 1,353,954 yahD NIAGMN_07065: yahC - Uncharacterized protein YahC, at 1,354,417 to 1,354,719 yahC NIAGMN_07070: NIAGMN_07070 - HTH lysR-type domain-containing protein, at 1,354,811 to 1,355,521 _07070 Position (kb) 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2at 1352.396 kb on + strandat 1352.397 kb on - strandat 1352.397 kb on - strandat 1352.542 kb on - strand, within yahEat 1352.659 kb on + strand, within yahEat 1352.812 kb on - strand, within yahEat 1353.058 kb on + strand, within yahEat 1353.059 kb on - strand, within yahEat 1353.085 kb on - strand, within yahEat 1353.085 kb on - strand, within yahEat 1353.108 kb on + strand, within yahEat 1353.109 kb on - strand, within yahEat 1353.350 kb on + strandat 1353.351 kb on - strandat 1353.351 kb on - strandat 1353.433 kb on - strand, within yahDat 1353.469 kb on + strand, within yahDat 1353.593 kb on - strand, within yahDat 1353.601 kb on + strand, within yahDat 1353.602 kb on - strand, within yahDat 1353.859 kb on - strand, within yahDat 1354.097 kb on + strandat 1354.148 kb on + strandat 1354.156 kb on + strandat 1354.158 kb on + strandat 1354.171 kb on + strandat 1354.171 kb on + strandat 1354.171 kb on + strandat 1354.171 kb on + strandat 1354.171 kb on + strandat 1354.171 kb on + strandat 1354.172 kb on - strandat 1354.172 kb on - strandat 1354.270 kb on + strandat 1354.270 kb on + strandat 1354.496 kb on + strand, within yahCat 1354.496 kb on + strand, within yahCat 1354.625 kb on + strand, within yahCat 1354.767 kb on + strandat 1354.767 kb on + strandat 1354.788 kb on + strandat 1354.788 kb on + strandat 1354.789 kb on - strandat 1354.810 kb on - strandat 1354.918 kb on + strand, within NIAGMN_07070at 1354.919 kb on - strand, within NIAGMN_07070at 1354.922 kb on + strand, within NIAGMN_07070at 1354.922 kb on + strand, within NIAGMN_07070at 1354.923 kb on - strand, within NIAGMN_07070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,352,396 + -1.2
1,352,397 - -0.3
1,352,397 - +0.2
1,352,542 - yahE NIAGMN_07055 0.11 -0.3
1,352,659 + yahE NIAGMN_07055 0.25 -1.5
1,352,812 - yahE NIAGMN_07055 0.42 -0.4
1,353,058 + yahE NIAGMN_07055 0.71 +1.6
1,353,059 - yahE NIAGMN_07055 0.71 +0.6
1,353,085 - yahE NIAGMN_07055 0.74 -0.7
1,353,085 - yahE NIAGMN_07055 0.74 -0.4
1,353,108 + yahE NIAGMN_07055 0.77 -1.8
1,353,109 - yahE NIAGMN_07055 0.77 +1.0
1,353,350 + +0.6
1,353,351 - +0.4
1,353,351 - +0.2
1,353,433 - yahD NIAGMN_07060 0.14 +1.6
1,353,469 + yahD NIAGMN_07060 0.20 +0.8
1,353,593 - yahD NIAGMN_07060 0.40 +0.4
1,353,601 + yahD NIAGMN_07060 0.42 -1.6
1,353,602 - yahD NIAGMN_07060 0.42 -0.1
1,353,859 - yahD NIAGMN_07060 0.84 -0.6
1,354,097 + -0.0
1,354,148 + -1.4
1,354,156 + +0.0
1,354,158 + -1.0
1,354,171 + +0.5
1,354,171 + -0.3
1,354,171 + -0.4
1,354,171 + -0.3
1,354,171 + -0.7
1,354,171 + -0.3
1,354,172 - +0.1
1,354,172 - -0.8
1,354,270 + +0.5
1,354,270 + +0.7
1,354,496 + yahC NIAGMN_07065 0.26 +0.1
1,354,496 + yahC NIAGMN_07065 0.26 -0.0
1,354,625 + yahC NIAGMN_07065 0.69 +1.0
1,354,767 + +0.6
1,354,767 + -0.0
1,354,788 + +0.4
1,354,788 + +1.0
1,354,789 - +0.2
1,354,810 - -0.8
1,354,918 + NIAGMN_07070 0.15 +0.9
1,354,919 - NIAGMN_07070 0.15 -0.1
1,354,922 + NIAGMN_07070 0.16 +0.1
1,354,922 + NIAGMN_07070 0.16 +2.5
1,354,923 - NIAGMN_07070 0.16 -1.0

Or see this region's nucleotide sequence