Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahF and yahE overlap by 11 nucleotides yahE and yahD are separated by 39 nucleotides
NIAGMN_07050: yahF - Uncharacterized protein YahF, at 1,350,909 to 1,352,456
yahF
NIAGMN_07055: yahE - Uncharacterized protein YahE, at 1,352,446 to 1,353,309
yahE
NIAGMN_07060: yahD - Putative ankyrin repeat protein YahD, at 1,353,349 to 1,353,954
yahD
Position (kb)
1352
1353
1354 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1351.491 kb on - strand, within yahF at 1351.539 kb on + strand, within yahF at 1351.573 kb on - strand, within yahF at 1351.932 kb on - strand, within yahF at 1352.127 kb on - strand, within yahF at 1352.148 kb on - strand, within yahF at 1352.244 kb on - strand, within yahF at 1352.396 kb on + strand at 1352.397 kb on - strand at 1352.397 kb on - strand at 1352.542 kb on - strand, within yahE at 1352.659 kb on + strand, within yahE at 1352.812 kb on - strand, within yahE at 1353.058 kb on + strand, within yahE at 1353.059 kb on - strand, within yahE at 1353.085 kb on - strand, within yahE at 1353.085 kb on - strand, within yahE at 1353.108 kb on + strand, within yahE at 1353.109 kb on - strand, within yahE at 1353.350 kb on + strand at 1353.351 kb on - strand at 1353.351 kb on - strand at 1353.433 kb on - strand, within yahD at 1353.469 kb on + strand, within yahD at 1353.593 kb on - strand, within yahD at 1353.601 kb on + strand, within yahD at 1353.602 kb on - strand, within yahD at 1353.859 kb on - strand, within yahD at 1354.097 kb on + strand at 1354.148 kb on + strand at 1354.156 kb on + strand at 1354.158 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.171 kb on + strand at 1354.172 kb on - strand at 1354.172 kb on - strand at 1354.270 kb on + strand at 1354.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,351,491 - yahF NIAGMN_07050 0.38 -0.1 1,351,539 + yahF NIAGMN_07050 0.41 -0.3 1,351,573 - yahF NIAGMN_07050 0.43 -1.0 1,351,932 - yahF NIAGMN_07050 0.66 +0.1 1,352,127 - yahF NIAGMN_07050 0.79 +0.1 1,352,148 - yahF NIAGMN_07050 0.80 -1.5 1,352,244 - yahF NIAGMN_07050 0.86 +2.0 1,352,396 + -1.2 1,352,397 - -0.3 1,352,397 - +0.2 1,352,542 - yahE NIAGMN_07055 0.11 -0.3 1,352,659 + yahE NIAGMN_07055 0.25 -1.5 1,352,812 - yahE NIAGMN_07055 0.42 -0.4 1,353,058 + yahE NIAGMN_07055 0.71 +1.6 1,353,059 - yahE NIAGMN_07055 0.71 +0.6 1,353,085 - yahE NIAGMN_07055 0.74 -0.7 1,353,085 - yahE NIAGMN_07055 0.74 -0.4 1,353,108 + yahE NIAGMN_07055 0.77 -1.8 1,353,109 - yahE NIAGMN_07055 0.77 +1.0 1,353,350 + +0.6 1,353,351 - +0.4 1,353,351 - +0.2 1,353,433 - yahD NIAGMN_07060 0.14 +1.6 1,353,469 + yahD NIAGMN_07060 0.20 +0.8 1,353,593 - yahD NIAGMN_07060 0.40 +0.4 1,353,601 + yahD NIAGMN_07060 0.42 -1.6 1,353,602 - yahD NIAGMN_07060 0.42 -0.1 1,353,859 - yahD NIAGMN_07060 0.84 -0.6 1,354,097 + -0.0 1,354,148 + -1.4 1,354,156 + +0.0 1,354,158 + -1.0 1,354,171 + +0.5 1,354,171 + -0.3 1,354,171 + -0.4 1,354,171 + -0.3 1,354,171 + -0.7 1,354,171 + -0.3 1,354,172 - +0.1 1,354,172 - -0.8 1,354,270 + +0.5 1,354,270 + +0.7
Or see this region's nucleotide sequence