Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06570

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntqueA and acpH are separated by 92 nucleotidesacpH and NIAGMN_06575 are separated by 20 nucleotides NIAGMN_06565: queA - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,251,020 to 1,252,090 queA NIAGMN_06570: acpH - ACP phosphodiesterase, at 1,252,183 to 1,252,764 acpH NIAGMN_06575: NIAGMN_06575 - hypothetical protein, at 1,252,785 to 1,254,230 _06575 Position (kb) 1252 1253Strain fitness (log2 ratio) -2 -1 0 1at 1251.318 kb on - strand, within queAat 1251.318 kb on - strand, within queAat 1251.381 kb on - strand, within queAat 1251.381 kb on - strand, within queAat 1251.584 kb on - strand, within queAat 1251.698 kb on - strand, within queAat 1251.749 kb on - strand, within queAat 1251.954 kb on - strand, within queAat 1252.107 kb on - strandat 1252.175 kb on + strandat 1252.176 kb on - strandat 1252.176 kb on - strandat 1252.178 kb on - strandat 1252.208 kb on + strandat 1252.311 kb on + strand, within acpHat 1252.311 kb on + strand, within acpHat 1252.312 kb on - strand, within acpHat 1252.312 kb on - strand, within acpHat 1252.312 kb on - strand, within acpHat 1252.323 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.331 kb on + strand, within acpHat 1252.332 kb on - strand, within acpHat 1252.404 kb on + strand, within acpHat 1252.405 kb on - strand, within acpHat 1252.407 kb on + strand, within acpHat 1252.407 kb on + strand, within acpHat 1252.408 kb on - strand, within acpHat 1252.492 kb on + strand, within acpHat 1252.493 kb on - strand, within acpHat 1252.558 kb on + strand, within acpHat 1252.558 kb on + strand, within acpHat 1252.559 kb on - strand, within acpHat 1252.559 kb on - strand, within acpHat 1252.559 kb on - strand, within acpHat 1252.559 kb on - strand, within acpHat 1252.563 kb on - strand, within acpHat 1252.679 kb on + strand, within acpHat 1252.690 kb on + strand, within acpHat 1252.691 kb on - strand, within acpHat 1252.691 kb on - strand, within acpHat 1252.724 kb on - strandat 1252.724 kb on - strandat 1252.865 kb on + strandat 1252.900 kb on - strandat 1252.929 kb on + strandat 1252.930 kb on - strand, within NIAGMN_06575at 1252.930 kb on - strand, within NIAGMN_06575at 1252.930 kb on - strand, within NIAGMN_06575at 1252.932 kb on - strand, within NIAGMN_06575at 1252.966 kb on - strand, within NIAGMN_06575at 1253.001 kb on - strand, within NIAGMN_06575at 1253.001 kb on - strand, within NIAGMN_06575at 1253.001 kb on - strand, within NIAGMN_06575at 1253.061 kb on + strand, within NIAGMN_06575at 1253.092 kb on - strand, within NIAGMN_06575at 1253.167 kb on + strand, within NIAGMN_06575at 1253.475 kb on - strand, within NIAGMN_06575at 1253.503 kb on - strand, within NIAGMN_06575at 1253.531 kb on + strand, within NIAGMN_06575at 1253.620 kb on - strand, within NIAGMN_06575at 1253.728 kb on - strand, within NIAGMN_06575

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,251,318 - queA NIAGMN_06565 0.28 -2.2
1,251,318 - queA NIAGMN_06565 0.28 +0.2
1,251,381 - queA NIAGMN_06565 0.34 -0.1
1,251,381 - queA NIAGMN_06565 0.34 -1.0
1,251,584 - queA NIAGMN_06565 0.53 -0.2
1,251,698 - queA NIAGMN_06565 0.63 -1.3
1,251,749 - queA NIAGMN_06565 0.68 +0.3
1,251,954 - queA NIAGMN_06565 0.87 +0.1
1,252,107 - -0.8
1,252,175 + -2.6
1,252,176 - +1.1
1,252,176 - +0.5
1,252,178 - +0.9
1,252,208 + +0.6
1,252,311 + acpH NIAGMN_06570 0.22 +0.5
1,252,311 + acpH NIAGMN_06570 0.22 +0.1
1,252,312 - acpH NIAGMN_06570 0.22 -0.4
1,252,312 - acpH NIAGMN_06570 0.22 +0.4
1,252,312 - acpH NIAGMN_06570 0.22 -0.7
1,252,323 + acpH NIAGMN_06570 0.24 -0.2
1,252,331 + acpH NIAGMN_06570 0.25 -2.5
1,252,331 + acpH NIAGMN_06570 0.25 -0.6
1,252,331 + acpH NIAGMN_06570 0.25 +1.1
1,252,331 + acpH NIAGMN_06570 0.25 +0.5
1,252,331 + acpH NIAGMN_06570 0.25 +0.2
1,252,331 + acpH NIAGMN_06570 0.25 +1.3
1,252,332 - acpH NIAGMN_06570 0.26 -1.9
1,252,404 + acpH NIAGMN_06570 0.38 -0.1
1,252,405 - acpH NIAGMN_06570 0.38 -1.8
1,252,407 + acpH NIAGMN_06570 0.38 +0.5
1,252,407 + acpH NIAGMN_06570 0.38 -0.2
1,252,408 - acpH NIAGMN_06570 0.39 -1.0
1,252,492 + acpH NIAGMN_06570 0.53 -0.2
1,252,493 - acpH NIAGMN_06570 0.53 -0.1
1,252,558 + acpH NIAGMN_06570 0.64 +0.2
1,252,558 + acpH NIAGMN_06570 0.64 +0.9
1,252,559 - acpH NIAGMN_06570 0.65 +0.9
1,252,559 - acpH NIAGMN_06570 0.65 +1.1
1,252,559 - acpH NIAGMN_06570 0.65 -0.4
1,252,559 - acpH NIAGMN_06570 0.65 -0.4
1,252,563 - acpH NIAGMN_06570 0.65 -2.1
1,252,679 + acpH NIAGMN_06570 0.85 -0.4
1,252,690 + acpH NIAGMN_06570 0.87 +0.5
1,252,691 - acpH NIAGMN_06570 0.87 +0.2
1,252,691 - acpH NIAGMN_06570 0.87 +0.3
1,252,724 - -0.2
1,252,724 - +0.3
1,252,865 + +0.6
1,252,900 - +0.2
1,252,929 + +0.6
1,252,930 - NIAGMN_06575 0.10 -0.9
1,252,930 - NIAGMN_06575 0.10 -2.0
1,252,930 - NIAGMN_06575 0.10 -1.0
1,252,932 - NIAGMN_06575 0.10 -2.1
1,252,966 - NIAGMN_06575 0.13 -0.3
1,253,001 - NIAGMN_06575 0.15 +0.5
1,253,001 - NIAGMN_06575 0.15 +0.8
1,253,001 - NIAGMN_06575 0.15 -0.1
1,253,061 + NIAGMN_06575 0.19 -0.4
1,253,092 - NIAGMN_06575 0.21 -0.0
1,253,167 + NIAGMN_06575 0.26 +1.3
1,253,475 - NIAGMN_06575 0.48 -1.0
1,253,503 - NIAGMN_06575 0.50 +0.2
1,253,531 + NIAGMN_06575 0.52 -2.3
1,253,620 - NIAGMN_06575 0.58 -1.8
1,253,728 - NIAGMN_06575 0.65 -0.2

Or see this region's nucleotide sequence