Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05585

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybdN and ybdM overlap by 28 nucleotidesybdM and ybdL are separated by 0 nucleotides NIAGMN_05580: ybdN - Uncharacterized protein YbdN, at 1,023,002 to 1,024,222 ybdN NIAGMN_05585: ybdM - Uncharacterized protein YbdM, at 1,024,195 to 1,024,824 ybdM NIAGMN_05590: ybdL - methionine-oxo-acid transaminase, at 1,024,825 to 1,025,985 ybdL Position (kb) 1024 1025Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1023.224 kb on + strand, within ybdNat 1023.224 kb on + strand, within ybdNat 1023.224 kb on + strand, within ybdNat 1023.248 kb on + strand, within ybdNat 1023.441 kb on + strand, within ybdNat 1023.515 kb on + strand, within ybdNat 1023.568 kb on + strand, within ybdNat 1023.602 kb on - strand, within ybdNat 1023.614 kb on + strand, within ybdNat 1023.689 kb on + strand, within ybdNat 1023.689 kb on + strand, within ybdNat 1023.691 kb on + strand, within ybdNat 1023.697 kb on - strand, within ybdNat 1023.701 kb on + strand, within ybdNat 1023.771 kb on + strand, within ybdNat 1023.779 kb on + strand, within ybdNat 1023.812 kb on - strand, within ybdNat 1023.875 kb on + strand, within ybdNat 1023.923 kb on + strand, within ybdNat 1023.923 kb on + strand, within ybdNat 1023.930 kb on + strand, within ybdNat 1023.930 kb on + strand, within ybdNat 1023.992 kb on + strand, within ybdNat 1023.992 kb on + strand, within ybdNat 1024.063 kb on + strand, within ybdNat 1024.063 kb on + strand, within ybdNat 1024.095 kb on + strand, within ybdNat 1024.154 kb on + strandat 1024.163 kb on + strandat 1024.164 kb on - strandat 1024.206 kb on + strandat 1024.206 kb on + strandat 1024.368 kb on + strand, within ybdMat 1024.369 kb on - strand, within ybdMat 1024.382 kb on - strand, within ybdMat 1024.382 kb on - strand, within ybdMat 1024.556 kb on + strand, within ybdMat 1024.564 kb on + strand, within ybdMat 1024.590 kb on + strand, within ybdMat 1024.617 kb on + strand, within ybdMat 1024.626 kb on + strand, within ybdMat 1024.764 kb on + strandat 1024.823 kb on - strandat 1024.823 kb on - strandat 1024.823 kb on - strandat 1024.826 kb on + strandat 1024.827 kb on - strandat 1024.827 kb on - strandat 1024.900 kb on - strandat 1025.028 kb on - strand, within ybdLat 1025.028 kb on - strand, within ybdLat 1025.102 kb on + strand, within ybdLat 1025.123 kb on + strand, within ybdLat 1025.143 kb on + strand, within ybdLat 1025.143 kb on + strand, within ybdLat 1025.143 kb on + strand, within ybdLat 1025.144 kb on - strand, within ybdLat 1025.144 kb on - strand, within ybdLat 1025.144 kb on - strand, within ybdLat 1025.144 kb on - strand, within ybdLat 1025.144 kb on - strand, within ybdLat 1025.195 kb on + strand, within ybdLat 1025.196 kb on - strand, within ybdLat 1025.269 kb on - strand, within ybdLat 1025.269 kb on - strand, within ybdLat 1025.372 kb on + strand, within ybdLat 1025.562 kb on + strand, within ybdLat 1025.604 kb on - strand, within ybdLat 1025.613 kb on - strand, within ybdLat 1025.736 kb on - strand, within ybdL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,023,224 + ybdN NIAGMN_05580 0.18 +0.1
1,023,224 + ybdN NIAGMN_05580 0.18 +1.1
1,023,224 + ybdN NIAGMN_05580 0.18 -2.9
1,023,248 + ybdN NIAGMN_05580 0.20 -1.6
1,023,441 + ybdN NIAGMN_05580 0.36 -0.2
1,023,515 + ybdN NIAGMN_05580 0.42 +0.1
1,023,568 + ybdN NIAGMN_05580 0.46 +3.1
1,023,602 - ybdN NIAGMN_05580 0.49 +0.7
1,023,614 + ybdN NIAGMN_05580 0.50 +0.3
1,023,689 + ybdN NIAGMN_05580 0.56 +0.2
1,023,689 + ybdN NIAGMN_05580 0.56 +1.3
1,023,691 + ybdN NIAGMN_05580 0.56 +0.6
1,023,697 - ybdN NIAGMN_05580 0.57 -0.6
1,023,701 + ybdN NIAGMN_05580 0.57 +1.0
1,023,771 + ybdN NIAGMN_05580 0.63 +1.7
1,023,779 + ybdN NIAGMN_05580 0.64 -1.8
1,023,812 - ybdN NIAGMN_05580 0.66 +0.0
1,023,875 + ybdN NIAGMN_05580 0.71 +0.6
1,023,923 + ybdN NIAGMN_05580 0.75 +1.2
1,023,923 + ybdN NIAGMN_05580 0.75 +0.2
1,023,930 + ybdN NIAGMN_05580 0.76 +1.3
1,023,930 + ybdN NIAGMN_05580 0.76 -1.9
1,023,992 + ybdN NIAGMN_05580 0.81 +0.8
1,023,992 + ybdN NIAGMN_05580 0.81 +0.9
1,024,063 + ybdN NIAGMN_05580 0.87 +0.5
1,024,063 + ybdN NIAGMN_05580 0.87 +0.2
1,024,095 + ybdN NIAGMN_05580 0.90 -0.9
1,024,154 + +0.4
1,024,163 + -0.4
1,024,164 - +0.7
1,024,206 + -0.8
1,024,206 + +1.4
1,024,368 + ybdM NIAGMN_05585 0.27 -0.3
1,024,369 - ybdM NIAGMN_05585 0.28 +1.5
1,024,382 - ybdM NIAGMN_05585 0.30 -0.1
1,024,382 - ybdM NIAGMN_05585 0.30 +0.7
1,024,556 + ybdM NIAGMN_05585 0.57 +0.7
1,024,564 + ybdM NIAGMN_05585 0.59 +0.3
1,024,590 + ybdM NIAGMN_05585 0.63 -0.3
1,024,617 + ybdM NIAGMN_05585 0.67 +1.7
1,024,626 + ybdM NIAGMN_05585 0.68 +0.4
1,024,764 + -0.0
1,024,823 - +0.0
1,024,823 - -0.5
1,024,823 - +0.7
1,024,826 + +1.8
1,024,827 - +1.1
1,024,827 - -0.7
1,024,900 - -0.1
1,025,028 - ybdL NIAGMN_05590 0.17 +0.2
1,025,028 - ybdL NIAGMN_05590 0.17 +1.7
1,025,102 + ybdL NIAGMN_05590 0.24 +1.2
1,025,123 + ybdL NIAGMN_05590 0.26 +0.2
1,025,143 + ybdL NIAGMN_05590 0.27 +0.3
1,025,143 + ybdL NIAGMN_05590 0.27 +1.2
1,025,143 + ybdL NIAGMN_05590 0.27 -2.1
1,025,144 - ybdL NIAGMN_05590 0.27 -1.3
1,025,144 - ybdL NIAGMN_05590 0.27 +0.9
1,025,144 - ybdL NIAGMN_05590 0.27 +0.4
1,025,144 - ybdL NIAGMN_05590 0.27 -0.6
1,025,144 - ybdL NIAGMN_05590 0.27 +2.3
1,025,195 + ybdL NIAGMN_05590 0.32 -0.8
1,025,196 - ybdL NIAGMN_05590 0.32 -0.3
1,025,269 - ybdL NIAGMN_05590 0.38 +0.0
1,025,269 - ybdL NIAGMN_05590 0.38 -1.4
1,025,372 + ybdL NIAGMN_05590 0.47 -0.3
1,025,562 + ybdL NIAGMN_05590 0.63 -0.1
1,025,604 - ybdL NIAGMN_05590 0.67 -0.8
1,025,613 - ybdL NIAGMN_05590 0.68 -1.6
1,025,736 - ybdL NIAGMN_05590 0.78 -0.6

Or see this region's nucleotide sequence