Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04985

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucA and sdhB are separated by 300 nucleotidessdhB and sdhA are separated by 15 nucleotides NIAGMN_04975: sucA - 2-oxoglutarate dehydrogenase E1 component, at 902,888 to 905,689 sucA NIAGMN_04985: sdhB - succinate dehydrogenase iron-sulfur subunit SdhB, at 905,990 to 906,706 sdhB NIAGMN_04990: sdhA - succinate dehydrogenase flavoprotein subunit, at 906,722 to 908,488 sdhA Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1 2at 905.786 kb on - strandat 905.992 kb on - strandat 905.992 kb on - strandat 905.999 kb on - strandat 905.999 kb on - strandat 905.999 kb on - strandat 905.999 kb on - strandat 906.063 kb on - strand, within sdhBat 906.063 kb on - strand, within sdhBat 906.063 kb on - strand, within sdhBat 906.063 kb on - strand, within sdhBat 906.063 kb on - strand, within sdhBat 906.171 kb on + strand, within sdhBat 906.200 kb on - strand, within sdhBat 906.260 kb on - strand, within sdhBat 906.260 kb on - strand, within sdhBat 906.306 kb on - strand, within sdhBat 906.306 kb on - strand, within sdhBat 906.349 kb on - strand, within sdhBat 906.482 kb on - strand, within sdhBat 906.482 kb on - strand, within sdhBat 906.482 kb on - strand, within sdhBat 906.640 kb on - strandat 906.640 kb on - strandat 906.679 kb on - strandat 906.724 kb on - strandat 906.726 kb on + strandat 906.727 kb on - strandat 906.814 kb on - strandat 906.814 kb on - strandat 907.046 kb on - strand, within sdhAat 907.046 kb on - strand, within sdhAat 907.091 kb on - strand, within sdhAat 907.308 kb on - strand, within sdhAat 907.412 kb on - strand, within sdhAat 907.426 kb on - strand, within sdhAat 907.426 kb on - strand, within sdhAat 907.426 kb on - strand, within sdhAat 907.426 kb on - strand, within sdhAat 907.426 kb on - strand, within sdhA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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905,786 - -1.1
905,992 - +0.2
905,992 - +0.7
905,999 - -2.1
905,999 - -0.2
905,999 - +0.4
905,999 - +1.0
906,063 - sdhB NIAGMN_04985 0.10 -0.1
906,063 - sdhB NIAGMN_04985 0.10 +0.3
906,063 - sdhB NIAGMN_04985 0.10 +0.1
906,063 - sdhB NIAGMN_04985 0.10 +0.2
906,063 - sdhB NIAGMN_04985 0.10 +0.5
906,171 + sdhB NIAGMN_04985 0.25 -1.3
906,200 - sdhB NIAGMN_04985 0.29 -2.1
906,260 - sdhB NIAGMN_04985 0.38 -0.6
906,260 - sdhB NIAGMN_04985 0.38 +0.7
906,306 - sdhB NIAGMN_04985 0.44 +0.1
906,306 - sdhB NIAGMN_04985 0.44 +0.3
906,349 - sdhB NIAGMN_04985 0.50 +0.2
906,482 - sdhB NIAGMN_04985 0.69 -0.7
906,482 - sdhB NIAGMN_04985 0.69 +0.9
906,482 - sdhB NIAGMN_04985 0.69 -1.3
906,640 - -1.2
906,640 - -1.4
906,679 - -1.6
906,724 - -0.9
906,726 + -1.3
906,727 - -0.0
906,814 - -0.8
906,814 - -0.6
907,046 - sdhA NIAGMN_04990 0.18 +2.7
907,046 - sdhA NIAGMN_04990 0.18 +0.3
907,091 - sdhA NIAGMN_04990 0.21 -1.6
907,308 - sdhA NIAGMN_04990 0.33 -0.8
907,412 - sdhA NIAGMN_04990 0.39 -0.3
907,426 - sdhA NIAGMN_04990 0.40 +0.8
907,426 - sdhA NIAGMN_04990 0.40 +0.0
907,426 - sdhA NIAGMN_04990 0.40 +0.8
907,426 - sdhA NIAGMN_04990 0.40 +0.5
907,426 - sdhA NIAGMN_04990 0.40 +0.3

Or see this region's nucleotide sequence