Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04905

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_04900 and NIAGMN_04905 are separated by 81 nucleotidesNIAGMN_04905 and glmS are separated by 547 nucleotidesglmS and glmL overlap by 1 nucleotides NIAGMN_04900: NIAGMN_04900 - hypothetical protein, at 885,882 to 886,826 _04900 NIAGMN_04905: NIAGMN_04905 - hypothetical protein, at 886,908 to 887,330 _04905 NIAGMN_04910: glmS - methylaspartate mutase subunit S, at 887,878 to 888,327 glmS NIAGMN_04915: glmL - methylaspartate mutase accessory protein GlmL, at 888,327 to 889,715 glmL Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1at 885.992 kb on - strand, within NIAGMN_04900at 886.792 kb on + strandat 886.956 kb on + strand, within NIAGMN_04905at 887.547 kb on + strandat 887.567 kb on + strandat 887.826 kb on + strandat 887.851 kb on + strandat 887.959 kb on - strand, within glmSat 888.015 kb on + strand, within glmSat 888.063 kb on + strand, within glmSat 888.067 kb on + strand, within glmSat 888.067 kb on + strand, within glmSat 888.068 kb on - strand, within glmSat 888.245 kb on + strand, within glmSat 888.306 kb on + strandat 888.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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885,992 - NIAGMN_04900 0.12 +0.2
886,792 + +0.1
886,956 + NIAGMN_04905 0.11 -0.9
887,547 + -1.0
887,567 + +1.3
887,826 + +0.3
887,851 + -0.1
887,959 - glmS NIAGMN_04910 0.18 +0.4
888,015 + glmS NIAGMN_04910 0.30 +1.2
888,063 + glmS NIAGMN_04910 0.41 -0.8
888,067 + glmS NIAGMN_04910 0.42 +0.2
888,067 + glmS NIAGMN_04910 0.42 +0.4
888,068 - glmS NIAGMN_04910 0.42 +1.3
888,245 + glmS NIAGMN_04910 0.82 +0.9
888,306 + +0.7
888,321 + -2.1

Or see this region's nucleotide sequence