Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exoD and NIAGMN_04660 overlap by 4 nucleotides NIAGMN_04660 and NIAGMN_04665 overlap by 28 nucleotides NIAGMN_04665 and NIAGMN_04670 overlap by 4 nucleotides NIAGMN_04670 and NIAGMN_04675 overlap by 4 nucleotides NIAGMN_04675 and NIAGMN_04680 are separated by 98 nucleotides NIAGMN_04680 and NIAGMN_04685 are separated by 210 nucleotides
NIAGMN_04655: exoD - Putative uncharacterized protein ExoD, at 845,684 to 846,364
exoD
NIAGMN_04660: NIAGMN_04660 - cruciferin, at 846,361 to 846,543
_04660
NIAGMN_04665: NIAGMN_04665 - DUF1382 domain-containing protein, at 846,516 to 846,707
_04665
NIAGMN_04670: NIAGMN_04670 - DUF1382 domain-containing protein, at 846,704 to 846,787
_04670
NIAGMN_04675: NIAGMN_04675 - Cell division protein ZapA, at 846,784 to 846,999
_04675
NIAGMN_04680: NIAGMN_04680 - conjugal transfer protein TraR, at 847,098 to 847,319
_04680
NIAGMN_04685: NIAGMN_04685 - hypothetical protein, at 847,530 to 848,132
_04685
Position (kb) 847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 846.161 kb on + strand, within exoD at 846.206 kb on + strand, within exoD at 846.206 kb on + strand, within exoD at 846.206 kb on + strand, within exoD at 846.494 kb on + strand, within NIAGMN_04660 at 846.498 kb on + strand, within NIAGMN_04660 at 846.501 kb on + strand, within NIAGMN_04660 at 846.541 kb on + strand at 846.704 kb on - strand at 846.975 kb on - strand, within NIAGMN_04675 at 847.561 kb on + strand at 847.578 kb on + strand at 847.618 kb on + strand, within NIAGMN_04685 at 847.625 kb on - strand, within NIAGMN_04685 at 847.807 kb on - strand, within NIAGMN_04685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 846,161 + exoD NIAGMN_04655 0.70 +0.9 846,206 + exoD NIAGMN_04655 0.77 +0.1 846,206 + exoD NIAGMN_04655 0.77 +0.6 846,206 + exoD NIAGMN_04655 0.77 +0.2 846,494 + NIAGMN_04660 0.73 +0.6 846,498 + NIAGMN_04660 0.75 -1.1 846,501 + NIAGMN_04660 0.77 -0.1 846,541 + -0.3 846,704 - -1.1 846,975 - NIAGMN_04675 0.88 -0.6 847,561 + +0.1 847,578 + -0.8 847,618 + NIAGMN_04685 0.15 -3.5 847,625 - NIAGMN_04685 0.16 -2.0 847,807 - NIAGMN_04685 0.46 -2.3
Or see this region's nucleotide sequence