Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleC and nleB2 are separated by 33 nucleotides nleB2 and NIAGMN_04485 are separated by 176 nucleotides NIAGMN_04485 and NIAGMN_04490 are separated by 1 nucleotides
NIAGMN_04475: nleC - type III secretion system effector zinc metalloprotease NleC, at 814,386 to 815,405
nleC
NIAGMN_04480: nleB2 - type III secretion system effector arginine glycosyltransferase NleB2, at 815,439 to 816,419
nleB2
NIAGMN_04485: NIAGMN_04485 - phage tail protein, at 816,596 to 816,865
_04485
NIAGMN_04490: NIAGMN_04490 - phage tail protein, at 816,867 to 818,183
_04490
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 814.445 kb on - strand at 814.527 kb on + strand, within nleC at 814.782 kb on - strand, within nleC at 814.901 kb on - strand, within nleC at 814.901 kb on - strand, within nleC at 814.901 kb on - strand, within nleC at 814.901 kb on - strand, within nleC at 815.166 kb on - strand, within nleC at 815.224 kb on - strand, within nleC at 815.262 kb on - strand, within nleC at 815.479 kb on - strand at 815.600 kb on + strand, within nleB2 at 815.731 kb on - strand, within nleB2 at 815.903 kb on - strand, within nleB2 at 816.082 kb on - strand, within nleB2 at 816.476 kb on + strand at 817.092 kb on + strand, within NIAGMN_04490 at 817.093 kb on - strand, within NIAGMN_04490 at 817.093 kb on - strand, within NIAGMN_04490 at 817.093 kb on - strand, within NIAGMN_04490 at 817.093 kb on - strand, within NIAGMN_04490 at 817.093 kb on - strand, within NIAGMN_04490 at 817.308 kb on - strand, within NIAGMN_04490 at 817.308 kb on - strand, within NIAGMN_04490
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 814,445 - +0.1 814,527 + nleC NIAGMN_04475 0.14 -0.2 814,782 - nleC NIAGMN_04475 0.39 -0.9 814,901 - nleC NIAGMN_04475 0.50 +0.8 814,901 - nleC NIAGMN_04475 0.50 +1.4 814,901 - nleC NIAGMN_04475 0.50 -0.1 814,901 - nleC NIAGMN_04475 0.50 -3.2 815,166 - nleC NIAGMN_04475 0.76 +1.0 815,224 - nleC NIAGMN_04475 0.82 +0.4 815,262 - nleC NIAGMN_04475 0.86 -0.1 815,479 - -0.2 815,600 + nleB2 NIAGMN_04480 0.16 -0.1 815,731 - nleB2 NIAGMN_04480 0.30 -0.0 815,903 - nleB2 NIAGMN_04480 0.47 +1.6 816,082 - nleB2 NIAGMN_04480 0.66 +0.8 816,476 + -0.3 817,092 + NIAGMN_04490 0.17 +0.0 817,093 - NIAGMN_04490 0.17 +0.5 817,093 - NIAGMN_04490 0.17 +0.4 817,093 - NIAGMN_04490 0.17 -0.7 817,093 - NIAGMN_04490 0.17 -1.3 817,093 - NIAGMN_04490 0.17 +0.1 817,308 - NIAGMN_04490 0.33 -0.2 817,308 - NIAGMN_04490 0.33 -0.0
Or see this region's nucleotide sequence