Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04475

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleC and nleB2 are separated by 33 nucleotides NIAGMN_04475: nleC - type III secretion system effector zinc metalloprotease NleC, at 814,386 to 815,405 nleC NIAGMN_04480: nleB2 - type III secretion system effector arginine glycosyltransferase NleB2, at 815,439 to 816,419 nleB2 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 813.737 kb on - strandat 813.801 kb on - strandat 813.861 kb on + strandat 814.198 kb on + strandat 814.310 kb on - strandat 814.310 kb on - strandat 814.366 kb on + strandat 814.367 kb on - strandat 814.427 kb on + strandat 814.427 kb on + strandat 814.445 kb on - strandat 814.527 kb on + strand, within nleCat 814.782 kb on - strand, within nleCat 814.901 kb on - strand, within nleCat 814.901 kb on - strand, within nleCat 814.901 kb on - strand, within nleCat 814.901 kb on - strand, within nleCat 815.166 kb on - strand, within nleCat 815.224 kb on - strand, within nleCat 815.262 kb on - strand, within nleCat 815.479 kb on - strandat 815.600 kb on + strand, within nleB2at 815.731 kb on - strand, within nleB2at 815.903 kb on - strand, within nleB2at 816.082 kb on - strand, within nleB2

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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813,737 - -0.2
813,801 - +2.9
813,861 + +2.4
814,198 + -1.0
814,310 - +0.1
814,310 - +3.0
814,366 + -0.6
814,367 - +0.9
814,427 + -0.1
814,427 + +0.4
814,445 - +0.1
814,527 + nleC NIAGMN_04475 0.14 -0.2
814,782 - nleC NIAGMN_04475 0.39 -0.9
814,901 - nleC NIAGMN_04475 0.50 +0.8
814,901 - nleC NIAGMN_04475 0.50 +1.4
814,901 - nleC NIAGMN_04475 0.50 -0.1
814,901 - nleC NIAGMN_04475 0.50 -3.2
815,166 - nleC NIAGMN_04475 0.76 +1.0
815,224 - nleC NIAGMN_04475 0.82 +0.4
815,262 - nleC NIAGMN_04475 0.86 -0.1
815,479 - -0.2
815,600 + nleB2 NIAGMN_04480 0.16 -0.1
815,731 - nleB2 NIAGMN_04480 0.30 -0.0
815,903 - nleB2 NIAGMN_04480 0.47 +1.6
816,082 - nleB2 NIAGMN_04480 0.66 +0.8

Or see this region's nucleotide sequence