Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleD and NIAGMN_04465 are separated by 61 nucleotides NIAGMN_04465 and NIAGMN_04470 are separated by 34 nucleotides
NIAGMN_04460: nleD - T3SS effector zinc metalloprotease NleD, at 811,748 to 812,446
nleD
NIAGMN_04465: NIAGMN_04465 - hypothetical protein, at 812,508 to 812,642
_04465
NIAGMN_04470: NIAGMN_04470 - T3SS effector protein NleH, at 812,677 to 813,285
_04470
Position (kb) 812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 811.544 kb on + strand at 811.545 kb on - strand at 811.545 kb on - strand at 811.563 kb on - strand at 811.586 kb on - strand at 811.586 kb on - strand at 811.723 kb on + strand at 811.725 kb on + strand at 811.726 kb on - strand at 811.726 kb on - strand at 811.726 kb on - strand at 811.726 kb on - strand at 811.728 kb on - strand at 811.728 kb on - strand at 811.728 kb on - strand at 811.728 kb on - strand at 811.728 kb on - strand at 811.750 kb on - strand at 811.750 kb on - strand at 811.770 kb on - strand at 811.796 kb on - strand at 811.995 kb on - strand, within nleD at 812.077 kb on - strand, within nleD at 812.077 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.139 kb on - strand, within nleD at 812.146 kb on + strand, within nleD at 812.147 kb on - strand, within nleD at 812.183 kb on + strand, within nleD at 812.184 kb on - strand, within nleD at 812.184 kb on - strand, within nleD at 812.237 kb on + strand, within nleD at 812.292 kb on + strand, within nleD at 812.293 kb on - strand, within nleD at 812.294 kb on + strand, within nleD at 812.294 kb on + strand, within nleD at 812.295 kb on - strand, within nleD at 812.295 kb on - strand, within nleD at 812.296 kb on + strand, within nleD at 812.296 kb on + strand, within nleD at 812.297 kb on - strand, within nleD at 812.300 kb on - strand, within nleD at 812.364 kb on - strand, within nleD at 812.378 kb on - strand at 812.418 kb on - strand at 812.418 kb on - strand at 812.437 kb on + strand at 812.701 kb on - strand at 812.820 kb on - strand, within NIAGMN_04470 at 813.117 kb on - strand, within NIAGMN_04470 at 813.117 kb on - strand, within NIAGMN_04470 at 813.144 kb on + strand, within NIAGMN_04470 at 813.173 kb on + strand, within NIAGMN_04470
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 811,544 + +1.8 811,545 - -1.1 811,545 - -0.6 811,563 - -0.0 811,586 - +0.7 811,586 - +1.5 811,723 + -0.5 811,725 + +0.3 811,726 - +2.9 811,726 - +0.6 811,726 - -0.3 811,726 - +2.4 811,728 - -0.0 811,728 - -0.5 811,728 - +0.3 811,728 - +0.2 811,728 - +1.1 811,750 - -0.7 811,750 - +1.6 811,770 - -0.3 811,796 - -1.1 811,995 - nleD NIAGMN_04460 0.35 -1.8 812,077 - nleD NIAGMN_04460 0.47 +0.9 812,077 - nleD NIAGMN_04460 0.47 +0.5 812,139 - nleD NIAGMN_04460 0.56 -1.5 812,139 - nleD NIAGMN_04460 0.56 +0.8 812,139 - nleD NIAGMN_04460 0.56 -1.2 812,139 - nleD NIAGMN_04460 0.56 +0.5 812,139 - nleD NIAGMN_04460 0.56 +1.7 812,139 - nleD NIAGMN_04460 0.56 +0.4 812,139 - nleD NIAGMN_04460 0.56 -0.2 812,146 + nleD NIAGMN_04460 0.57 -0.3 812,147 - nleD NIAGMN_04460 0.57 -0.1 812,183 + nleD NIAGMN_04460 0.62 +0.7 812,184 - nleD NIAGMN_04460 0.62 -0.3 812,184 - nleD NIAGMN_04460 0.62 +1.4 812,237 + nleD NIAGMN_04460 0.70 -0.6 812,292 + nleD NIAGMN_04460 0.78 -0.4 812,293 - nleD NIAGMN_04460 0.78 -3.3 812,294 + nleD NIAGMN_04460 0.78 +0.3 812,294 + nleD NIAGMN_04460 0.78 +1.1 812,295 - nleD NIAGMN_04460 0.78 +0.7 812,295 - nleD NIAGMN_04460 0.78 -0.6 812,296 + nleD NIAGMN_04460 0.78 +0.4 812,296 + nleD NIAGMN_04460 0.78 -1.1 812,297 - nleD NIAGMN_04460 0.79 +0.8 812,300 - nleD NIAGMN_04460 0.79 -0.1 812,364 - nleD NIAGMN_04460 0.88 -0.3 812,378 - +1.2 812,418 - +1.0 812,418 - -1.5 812,437 + +0.3 812,701 - -0.6 812,820 - NIAGMN_04470 0.23 +0.7 813,117 - NIAGMN_04470 0.72 +0.4 813,117 - NIAGMN_04470 0.72 +1.9 813,144 + NIAGMN_04470 0.77 +0.3 813,173 + NIAGMN_04470 0.81 +0.7
Or see this region's nucleotide sequence