Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04125

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdgcI and pdeI are separated by 7 nucleotidespdeI and gsiD are separated by 177 nucleotides NIAGMN_04120: dgcI - putative diguanylate cyclase DgcI, at 740,043 to 741,371 dgcI NIAGMN_04125: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 741,379 to 743,727 pdeI NIAGMN_04130: gsiD - glutathione ABC transporter permease GsiD, at 743,905 to 744,816 gsiD Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1at 740.497 kb on + strand, within dgcIat 740.725 kb on + strand, within dgcIat 740.976 kb on - strand, within dgcIat 741.103 kb on + strand, within dgcIat 741.503 kb on - strandat 741.534 kb on - strandat 741.970 kb on - strand, within pdeIat 742.072 kb on - strand, within pdeIat 742.072 kb on - strand, within pdeIat 742.354 kb on - strand, within pdeIat 743.012 kb on + strand, within pdeIat 743.425 kb on + strand, within pdeIat 744.153 kb on + strand, within gsiDat 744.312 kb on + strand, within gsiDat 744.432 kb on - strand, within gsiDat 744.432 kb on - strand, within gsiDat 744.671 kb on - strand, within gsiD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
740,497 + dgcI NIAGMN_04120 0.34 +1.4
740,725 + dgcI NIAGMN_04120 0.51 -0.3
740,976 - dgcI NIAGMN_04120 0.70 -0.4
741,103 + dgcI NIAGMN_04120 0.80 +0.6
741,503 - +0.1
741,534 - +0.7
741,970 - pdeI NIAGMN_04125 0.25 +1.0
742,072 - pdeI NIAGMN_04125 0.30 -0.9
742,072 - pdeI NIAGMN_04125 0.30 +0.2
742,354 - pdeI NIAGMN_04125 0.42 -1.0
743,012 + pdeI NIAGMN_04125 0.70 -0.5
743,425 + pdeI NIAGMN_04125 0.87 -1.4
744,153 + gsiD NIAGMN_04130 0.27 +0.6
744,312 + gsiD NIAGMN_04130 0.45 -1.8
744,432 - gsiD NIAGMN_04130 0.58 -0.9
744,432 - gsiD NIAGMN_04130 0.58 -1.0
744,671 - gsiD NIAGMN_04130 0.84 +0.9

Or see this region's nucleotide sequence