Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimO and NIAGMN_04110 are separated by 225 nucleotides NIAGMN_04110 and yiaG overlap by 11 nucleotides yiaG and dgcI are separated by 69 nucleotides
NIAGMN_04105: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 737,717 to 739,042
rimO
NIAGMN_04110: NIAGMN_04110 - addiction module toxin RelE, at 739,268 to 739,654
_04110
NIAGMN_04115: yiaG - transcriptional regulator, at 739,644 to 739,973
yiaG
NIAGMN_04120: dgcI - putative diguanylate cyclase DgcI, at 740,043 to 741,371
dgcI
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.492 kb on - strand, within rimO at 738.615 kb on + strand, within rimO at 738.628 kb on + strand, within rimO at 739.041 kb on - strand at 739.062 kb on - strand at 739.161 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.277 kb on + strand at 739.277 kb on + strand at 739.368 kb on + strand, within NIAGMN_04110 at 739.450 kb on + strand, within NIAGMN_04110 at 739.557 kb on - strand, within NIAGMN_04110 at 739.588 kb on + strand, within NIAGMN_04110 at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.892 kb on + strand, within yiaG at 739.925 kb on + strand, within yiaG at 740.028 kb on - strand at 740.130 kb on - strand at 740.497 kb on + strand, within dgcI
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 738,492 - rimO NIAGMN_04105 0.58 -0.9 738,615 + rimO NIAGMN_04105 0.68 +0.9 738,628 + rimO NIAGMN_04105 0.69 +1.4 739,041 - +1.2 739,062 - +0.7 739,161 + +0.0 739,267 + -0.4 739,267 + +2.2 739,267 + +1.1 739,277 + -2.7 739,277 + -0.1 739,368 + NIAGMN_04110 0.26 -0.3 739,450 + NIAGMN_04110 0.47 -1.0 739,557 - NIAGMN_04110 0.75 +0.5 739,588 + NIAGMN_04110 0.83 +1.4 739,850 + yiaG NIAGMN_04115 0.62 -2.4 739,850 + yiaG NIAGMN_04115 0.62 +1.5 739,850 + yiaG NIAGMN_04115 0.62 +1.1 739,892 + yiaG NIAGMN_04115 0.75 -0.1 739,925 + yiaG NIAGMN_04115 0.85 +0.2 740,028 - -0.1 740,130 - -0.0 740,497 + dgcI NIAGMN_04120 0.34 +1.4
Or see this region's nucleotide sequence