Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliI and bssR are separated by 110 nucleotides bssR and rimO are separated by 212 nucleotides rimO and NIAGMN_04110 are separated by 225 nucleotides NIAGMN_04110 and yiaG overlap by 11 nucleotides
NIAGMN_04095: yliI - aldose sugar dehydrogenase YliI, at 735,895 to 737,010
yliI
NIAGMN_04100: bssR - biofilm formation regulator BssR, at 737,121 to 737,504
bssR
NIAGMN_04105: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 737,717 to 739,042
rimO
NIAGMN_04110: NIAGMN_04110 - addiction module toxin RelE, at 739,268 to 739,654
_04110
NIAGMN_04115: yiaG - transcriptional regulator, at 739,644 to 739,973
yiaG
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.742 kb on - strand, within yliI at 736.811 kb on - strand, within yliI at 736.866 kb on + strand, within yliI at 736.937 kb on - strand at 737.010 kb on + strand at 737.035 kb on + strand at 737.042 kb on + strand at 737.042 kb on + strand at 737.116 kb on - strand at 737.216 kb on + strand, within bssR at 737.340 kb on - strand, within bssR at 737.408 kb on - strand, within bssR at 737.505 kb on - strand at 737.544 kb on - strand at 737.544 kb on - strand at 737.566 kb on - strand at 737.670 kb on + strand at 737.716 kb on + strand at 737.727 kb on + strand at 737.882 kb on - strand, within rimO at 737.946 kb on + strand, within rimO at 738.032 kb on + strand, within rimO at 738.240 kb on + strand, within rimO at 738.492 kb on - strand, within rimO at 738.615 kb on + strand, within rimO at 738.628 kb on + strand, within rimO at 739.041 kb on - strand at 739.062 kb on - strand at 739.161 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.277 kb on + strand at 739.277 kb on + strand at 739.368 kb on + strand, within NIAGMN_04110 at 739.450 kb on + strand, within NIAGMN_04110 at 739.557 kb on - strand, within NIAGMN_04110 at 739.588 kb on + strand, within NIAGMN_04110 at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.892 kb on + strand, within yiaG at 739.925 kb on + strand, within yiaG at 740.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 736,742 - yliI NIAGMN_04095 0.76 -0.0 736,811 - yliI NIAGMN_04095 0.82 -0.3 736,866 + yliI NIAGMN_04095 0.87 +0.1 736,937 - +0.3 737,010 + +1.0 737,035 + +0.3 737,042 + +1.8 737,042 + -0.2 737,116 - +0.9 737,216 + bssR NIAGMN_04100 0.25 +0.2 737,340 - bssR NIAGMN_04100 0.57 -1.3 737,408 - bssR NIAGMN_04100 0.75 -1.3 737,505 - -1.8 737,544 - -2.5 737,544 - +1.0 737,566 - +0.2 737,670 + -2.0 737,716 + -2.0 737,727 + +2.2 737,882 - rimO NIAGMN_04105 0.12 +0.4 737,946 + rimO NIAGMN_04105 0.17 +1.8 738,032 + rimO NIAGMN_04105 0.24 -2.3 738,240 + rimO NIAGMN_04105 0.39 -0.6 738,492 - rimO NIAGMN_04105 0.58 -0.9 738,615 + rimO NIAGMN_04105 0.68 +0.9 738,628 + rimO NIAGMN_04105 0.69 +1.4 739,041 - +1.2 739,062 - +0.7 739,161 + +0.0 739,267 + -0.4 739,267 + +2.2 739,267 + +1.1 739,277 + -2.7 739,277 + -0.1 739,368 + NIAGMN_04110 0.26 -0.3 739,450 + NIAGMN_04110 0.47 -1.0 739,557 - NIAGMN_04110 0.75 +0.5 739,588 + NIAGMN_04110 0.83 +1.4 739,850 + yiaG NIAGMN_04115 0.62 -2.4 739,850 + yiaG NIAGMN_04115 0.62 +1.5 739,850 + yiaG NIAGMN_04115 0.62 +1.1 739,892 + yiaG NIAGMN_04115 0.75 -0.1 739,925 + yiaG NIAGMN_04115 0.85 +0.2 740,028 - -0.1
Or see this region's nucleotide sequence