Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdfA and ybjG are separated by 284 nucleotides ybjG and deoR are separated by 57 nucleotides deoR and dacC are separated by 46 nucleotides
NIAGMN_04070: mdfA - multidrug efflux MFS transporter MdfA, at 730,848 to 732,080
mdfA
NIAGMN_04075: ybjG - undecaprenyl-diphosphate phosphatase, at 732,365 to 732,961
ybjG
NIAGMN_04080: deoR - DNA-binding transcriptional repressor DeoR, at 733,019 to 733,777
deoR
NIAGMN_04085: dacC - serine-type D-Ala-D-Ala carboxypeptidase, at 733,824 to 735,026
dacC
Position (kb) 732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 731.444 kb on + strand, within mdfA at 731.445 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.702 kb on - strand, within mdfA at 731.782 kb on - strand, within mdfA at 731.782 kb on - strand, within mdfA at 731.784 kb on + strand, within mdfA at 731.847 kb on - strand, within mdfA at 731.847 kb on - strand, within mdfA at 731.877 kb on + strand, within mdfA at 731.878 kb on - strand, within mdfA at 731.900 kb on - strand, within mdfA at 731.916 kb on - strand, within mdfA at 731.916 kb on - strand, within mdfA at 731.942 kb on - strand, within mdfA at 731.964 kb on - strand at 731.992 kb on + strand at 731.993 kb on - strand at 731.993 kb on - strand at 732.067 kb on - strand at 732.098 kb on - strand at 732.179 kb on - strand at 732.179 kb on - strand at 732.193 kb on - strand at 732.193 kb on - strand at 732.193 kb on - strand at 732.194 kb on + strand at 732.195 kb on - strand at 732.195 kb on - strand at 732.195 kb on - strand at 732.199 kb on - strand at 732.221 kb on - strand at 732.226 kb on - strand at 732.296 kb on + strand at 732.309 kb on - strand at 732.328 kb on + strand at 732.364 kb on + strand at 732.365 kb on - strand at 732.390 kb on + strand at 732.451 kb on + strand, within ybjG at 732.495 kb on + strand, within ybjG at 732.537 kb on + strand, within ybjG at 732.634 kb on + strand, within ybjG at 732.714 kb on + strand, within ybjG at 732.883 kb on + strand, within ybjG at 732.883 kb on + strand, within ybjG at 732.981 kb on + strand at 732.981 kb on + strand at 733.001 kb on + strand at 733.001 kb on + strand at 733.005 kb on + strand at 733.065 kb on + strand at 733.078 kb on + strand at 733.288 kb on - strand, within deoR at 733.390 kb on - strand, within deoR at 733.393 kb on + strand, within deoR at 733.573 kb on + strand, within deoR at 733.733 kb on + strand at 733.733 kb on + strand at 733.733 kb on + strand at 733.762 kb on + strand at 733.762 kb on + strand at 733.763 kb on - strand at 733.784 kb on - strand at 733.825 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 731,444 + mdfA NIAGMN_04070 0.48 +0.7 731,445 - mdfA NIAGMN_04070 0.48 +0.2 731,447 - mdfA NIAGMN_04070 0.49 +0.2 731,447 - mdfA NIAGMN_04070 0.49 -0.6 731,447 - mdfA NIAGMN_04070 0.49 -0.5 731,447 - mdfA NIAGMN_04070 0.49 -0.2 731,702 - mdfA NIAGMN_04070 0.69 -1.4 731,782 - mdfA NIAGMN_04070 0.76 -0.0 731,782 - mdfA NIAGMN_04070 0.76 -2.4 731,784 + mdfA NIAGMN_04070 0.76 +0.7 731,847 - mdfA NIAGMN_04070 0.81 -0.7 731,847 - mdfA NIAGMN_04070 0.81 -1.0 731,877 + mdfA NIAGMN_04070 0.83 +0.6 731,878 - mdfA NIAGMN_04070 0.84 +0.9 731,900 - mdfA NIAGMN_04070 0.85 +1.1 731,916 - mdfA NIAGMN_04070 0.87 +1.4 731,916 - mdfA NIAGMN_04070 0.87 +0.6 731,942 - mdfA NIAGMN_04070 0.89 +0.5 731,964 - +0.9 731,992 + -1.9 731,993 - -3.4 731,993 - +0.3 732,067 - +0.9 732,098 - -1.1 732,179 - -0.1 732,179 - -1.3 732,193 - +0.4 732,193 - -0.6 732,193 - +0.8 732,194 + -0.7 732,195 - +1.6 732,195 - -1.9 732,195 - -0.3 732,199 - -0.2 732,221 - -0.6 732,226 - +0.5 732,296 + +0.4 732,309 - +1.0 732,328 + +1.9 732,364 + -1.0 732,365 - +0.7 732,390 + +1.1 732,451 + ybjG NIAGMN_04075 0.14 +0.1 732,495 + ybjG NIAGMN_04075 0.22 +0.8 732,537 + ybjG NIAGMN_04075 0.29 -2.9 732,634 + ybjG NIAGMN_04075 0.45 +1.6 732,714 + ybjG NIAGMN_04075 0.58 -0.9 732,883 + ybjG NIAGMN_04075 0.87 -0.3 732,883 + ybjG NIAGMN_04075 0.87 -0.6 732,981 + -0.5 732,981 + -2.1 733,001 + +0.8 733,001 + +0.0 733,005 + -1.3 733,065 + -0.8 733,078 + -1.0 733,288 - deoR NIAGMN_04080 0.35 +0.7 733,390 - deoR NIAGMN_04080 0.49 -0.9 733,393 + deoR NIAGMN_04080 0.49 -0.6 733,573 + deoR NIAGMN_04080 0.73 +0.8 733,733 + +1.0 733,733 + -0.4 733,733 + -0.9 733,762 + -3.3 733,762 + +1.3 733,763 - -2.2 733,784 - +0.1 733,825 + +0.1
Or see this region's nucleotide sequence