Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaA and rlmC are separated by 297 nucleotides rlmC and ybjO are separated by 40 nucleotides ybjO and potI are separated by 59 nucleotides
NIAGMN_03975: ulaA - PTS sugar transporter subunit IIC, at 714,485 to 715,810
ulaA
NIAGMN_03980: rlmC - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 716,108 to 717,235
rlmC
NIAGMN_03985: ybjO - Inner membrane protein YbjO, at 717,276 to 717,764
ybjO
NIAGMN_03990: potI - putrescine ABC transporter permease PotI, at 717,824 to 718,669
potI
Position (kb) 716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 715.923 kb on + strand at 716.014 kb on - strand at 716.058 kb on - strand at 716.058 kb on - strand at 716.075 kb on + strand at 716.527 kb on + strand, within rlmC at 716.527 kb on + strand, within rlmC at 716.528 kb on - strand, within rlmC at 716.528 kb on - strand, within rlmC at 716.528 kb on - strand, within rlmC at 716.528 kb on - strand, within rlmC at 716.528 kb on - strand, within rlmC at 716.742 kb on - strand, within rlmC at 716.899 kb on - strand, within rlmC at 717.235 kb on + strand at 717.236 kb on - strand at 717.270 kb on + strand at 717.271 kb on - strand at 717.271 kb on - strand at 717.271 kb on - strand at 717.271 kb on - strand at 717.570 kb on + strand, within ybjO at 717.586 kb on - strand, within ybjO at 717.629 kb on + strand, within ybjO at 717.793 kb on + strand at 717.793 kb on + strand at 717.793 kb on + strand at 717.794 kb on - strand at 717.794 kb on - strand at 717.794 kb on - strand at 717.935 kb on + strand, within potI at 717.936 kb on - strand, within potI
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 715,923 + -0.0 716,014 - +0.5 716,058 - +0.6 716,058 - -1.2 716,075 + -0.4 716,527 + rlmC NIAGMN_03980 0.37 -0.2 716,527 + rlmC NIAGMN_03980 0.37 +0.1 716,528 - rlmC NIAGMN_03980 0.37 +0.1 716,528 - rlmC NIAGMN_03980 0.37 -0.4 716,528 - rlmC NIAGMN_03980 0.37 -1.1 716,528 - rlmC NIAGMN_03980 0.37 -1.6 716,528 - rlmC NIAGMN_03980 0.37 +0.8 716,742 - rlmC NIAGMN_03980 0.56 +1.9 716,899 - rlmC NIAGMN_03980 0.70 -1.8 717,235 + -1.6 717,236 - -0.6 717,270 + +0.2 717,271 - +1.0 717,271 - +0.2 717,271 - +0.4 717,271 - +0.0 717,570 + ybjO NIAGMN_03985 0.60 -1.3 717,586 - ybjO NIAGMN_03985 0.63 -1.5 717,629 + ybjO NIAGMN_03985 0.72 -1.0 717,793 + +0.2 717,793 + +0.5 717,793 + -1.8 717,794 - +1.2 717,794 - -0.1 717,794 - +1.0 717,935 + potI NIAGMN_03990 0.13 +0.5 717,936 - potI NIAGMN_03990 0.13 -0.4
Or see this region's nucleotide sequence