Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03435

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_03430 and spo0J are separated by 368 nucleotidesspo0J and ybdN overlap by 16 nucleotides NIAGMN_03430: NIAGMN_03430 - hypothetical protein, at 613,866 to 614,510 _03430 NIAGMN_03435: spo0J - transcriptional regulator, at 614,879 to 615,517 spo0J NIAGMN_03440: ybdN - phosphoadenosine phosphosulfate reductase, at 615,502 to 616,734 ybdN Position (kb) 614 615 616Strain fitness (log2 ratio) -2 -1 0 1 2 3at 613.881 kb on - strandat 613.903 kb on - strandat 614.394 kb on + strand, within NIAGMN_03430at 614.429 kb on - strand, within NIAGMN_03430at 614.484 kb on - strandat 614.511 kb on + strandat 614.546 kb on - strandat 614.846 kb on - strandat 614.859 kb on - strandat 614.862 kb on - strandat 614.863 kb on + strandat 614.864 kb on - strandat 614.864 kb on - strandat 614.864 kb on - strandat 615.098 kb on - strand, within spo0Jat 615.098 kb on - strand, within spo0Jat 615.220 kb on - strand, within spo0Jat 615.220 kb on - strand, within spo0Jat 615.325 kb on - strand, within spo0Jat 615.325 kb on - strand, within spo0Jat 615.469 kb on - strandat 615.548 kb on + strandat 615.549 kb on - strandat 615.558 kb on - strandat 615.614 kb on - strandat 615.616 kb on - strandat 615.616 kb on - strandat 615.616 kb on - strandat 615.616 kb on - strandat 615.616 kb on - strandat 615.624 kb on + strandat 615.624 kb on + strandat 615.726 kb on - strand, within ybdNat 615.742 kb on - strand, within ybdNat 615.742 kb on - strand, within ybdNat 615.795 kb on - strand, within ybdNat 615.829 kb on - strand, within ybdNat 616.020 kb on - strand, within ybdNat 616.043 kb on + strand, within ybdNat 616.067 kb on + strand, within ybdNat 616.068 kb on - strand, within ybdNat 616.068 kb on - strand, within ybdNat 616.070 kb on - strand, within ybdNat 616.164 kb on - strand, within ybdNat 616.476 kb on - strand, within ybdNat 616.498 kb on - strand, within ybdN

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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613,881 - -0.0
613,903 - -2.3
614,394 + NIAGMN_03430 0.82 -2.5
614,429 - NIAGMN_03430 0.87 +0.9
614,484 - -0.1
614,511 + +0.6
614,546 - -1.5
614,846 - +0.9
614,859 - +1.7
614,862 - -2.3
614,863 + -0.2
614,864 - +0.1
614,864 - -1.7
614,864 - -0.2
615,098 - spo0J NIAGMN_03435 0.34 +1.5
615,098 - spo0J NIAGMN_03435 0.34 +1.8
615,220 - spo0J NIAGMN_03435 0.53 -0.8
615,220 - spo0J NIAGMN_03435 0.53 +0.8
615,325 - spo0J NIAGMN_03435 0.70 -1.5
615,325 - spo0J NIAGMN_03435 0.70 +0.2
615,469 - -0.1
615,548 + -0.2
615,549 - +0.2
615,558 - -0.9
615,614 - +0.3
615,616 - +0.4
615,616 - +0.8
615,616 - -1.2
615,616 - -1.5
615,616 - +1.0
615,624 + -0.2
615,624 + +0.3
615,726 - ybdN NIAGMN_03440 0.18 +3.2
615,742 - ybdN NIAGMN_03440 0.19 +1.3
615,742 - ybdN NIAGMN_03440 0.19 -1.8
615,795 - ybdN NIAGMN_03440 0.24 +0.9
615,829 - ybdN NIAGMN_03440 0.27 +0.1
616,020 - ybdN NIAGMN_03440 0.42 +0.2
616,043 + ybdN NIAGMN_03440 0.44 +0.8
616,067 + ybdN NIAGMN_03440 0.46 -0.6
616,068 - ybdN NIAGMN_03440 0.46 +0.1
616,068 - ybdN NIAGMN_03440 0.46 -0.4
616,070 - ybdN NIAGMN_03440 0.46 +2.3
616,164 - ybdN NIAGMN_03440 0.54 -2.2
616,476 - ybdN NIAGMN_03440 0.79 +0.5
616,498 - ybdN NIAGMN_03440 0.81 +0.2

Or see this region's nucleotide sequence