Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03375 and NIAGMN_03380 overlap by 4 nucleotides NIAGMN_03380 and NIAGMN_03385 overlap by 4 nucleotides NIAGMN_03385 and cah are separated by 110 nucleotides
NIAGMN_03375: NIAGMN_03375 - phospholipase, at 603,073 to 604,143
_03375
NIAGMN_03380: NIAGMN_03380 - chemotaxis protein, at 604,140 to 605,045
_03380
NIAGMN_03385: NIAGMN_03385 - dGTPase, at 605,042 to 607,426
_03385
NIAGMN_03390: cah - calcium-binding autotransporter Cah, at 607,537 to 610,386
cah
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -2
-1
0
1 at 605.317 kb on + strand, within NIAGMN_03385 at 605.917 kb on - strand, within NIAGMN_03385 at 605.961 kb on - strand, within NIAGMN_03385 at 606.065 kb on - strand, within NIAGMN_03385 at 606.068 kb on - strand, within NIAGMN_03385 at 606.068 kb on - strand, within NIAGMN_03385 at 606.114 kb on - strand, within NIAGMN_03385 at 606.244 kb on + strand, within NIAGMN_03385 at 606.310 kb on + strand, within NIAGMN_03385 at 606.311 kb on - strand, within NIAGMN_03385 at 606.311 kb on - strand, within NIAGMN_03385 at 606.380 kb on + strand, within NIAGMN_03385 at 606.408 kb on + strand, within NIAGMN_03385 at 606.409 kb on - strand, within NIAGMN_03385 at 606.489 kb on - strand, within NIAGMN_03385 at 606.581 kb on - strand, within NIAGMN_03385 at 606.628 kb on - strand, within NIAGMN_03385 at 606.870 kb on - strand, within NIAGMN_03385 at 606.943 kb on + strand, within NIAGMN_03385 at 606.950 kb on + strand, within NIAGMN_03385 at 607.038 kb on - strand, within NIAGMN_03385 at 607.532 kb on + strand at 607.569 kb on + strand at 607.571 kb on + strand at 607.632 kb on + strand at 607.710 kb on + strand at 607.870 kb on - strand, within cah at 607.938 kb on - strand, within cah at 608.268 kb on - strand, within cah at 608.268 kb on - strand, within cah at 608.268 kb on - strand, within cah
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 605,317 + NIAGMN_03385 0.12 -0.5 605,917 - NIAGMN_03385 0.37 +0.8 605,961 - NIAGMN_03385 0.39 -0.2 606,065 - NIAGMN_03385 0.43 -0.2 606,068 - NIAGMN_03385 0.43 -1.0 606,068 - NIAGMN_03385 0.43 -0.1 606,114 - NIAGMN_03385 0.45 -0.3 606,244 + NIAGMN_03385 0.50 +0.8 606,310 + NIAGMN_03385 0.53 -2.6 606,311 - NIAGMN_03385 0.53 +0.2 606,311 - NIAGMN_03385 0.53 -0.6 606,380 + NIAGMN_03385 0.56 +0.5 606,408 + NIAGMN_03385 0.57 +0.1 606,409 - NIAGMN_03385 0.57 +0.8 606,489 - NIAGMN_03385 0.61 -0.8 606,581 - NIAGMN_03385 0.65 +0.8 606,628 - NIAGMN_03385 0.66 +0.9 606,870 - NIAGMN_03385 0.77 +0.1 606,943 + NIAGMN_03385 0.80 -1.0 606,950 + NIAGMN_03385 0.80 +0.2 607,038 - NIAGMN_03385 0.84 -0.4 607,532 + +1.3 607,569 + +0.2 607,571 + -2.6 607,632 + +1.0 607,710 + -1.9 607,870 - cah NIAGMN_03390 0.12 -1.1 607,938 - cah NIAGMN_03390 0.14 +0.5 608,268 - cah NIAGMN_03390 0.26 +0.0 608,268 - cah NIAGMN_03390 0.26 +0.0 608,268 - cah NIAGMN_03390 0.26 +0.0
Or see this region's nucleotide sequence