Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uup and rlmKL are separated by 11 nucleotides rlmKL and ycbX are separated by 243 nucleotides
NIAGMN_02995: uup - ABC transporter ATP-binding protein, at 513,450 to 515,357
uup
NIAGMN_03000: rlmKL - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 515,369 to 517,477
rlmKL
NIAGMN_03005: ycbX - 6-N-hydroxylaminopurine resistance protein YcbX, at 517,721 to 518,830
ycbX
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.379 kb on - strand, within uup at 514.646 kb on - strand, within uup at 515.108 kb on - strand, within uup at 515.115 kb on - strand, within uup at 515.359 kb on - strand at 515.362 kb on - strand at 515.617 kb on + strand, within rlmKL at 516.196 kb on - strand, within rlmKL at 516.558 kb on - strand, within rlmKL at 516.775 kb on + strand, within rlmKL at 516.874 kb on + strand, within rlmKL at 517.002 kb on - strand, within rlmKL at 517.307 kb on - strand at 517.310 kb on - strand at 517.495 kb on - strand at 517.495 kb on - strand at 517.495 kb on - strand at 517.517 kb on - strand at 517.517 kb on - strand at 517.574 kb on - strand at 517.574 kb on - strand at 517.574 kb on - strand at 517.574 kb on - strand at 517.616 kb on - strand at 517.616 kb on - strand at 517.626 kb on - strand at 517.626 kb on - strand at 517.659 kb on + strand at 517.662 kb on - strand at 517.665 kb on + strand at 517.666 kb on - strand at 517.666 kb on - strand at 517.666 kb on - strand at 517.744 kb on + strand at 517.950 kb on - strand, within ycbX at 518.079 kb on + strand, within ycbX at 518.184 kb on + strand, within ycbX at 518.278 kb on + strand, within ycbX at 518.323 kb on + strand, within ycbX at 518.473 kb on + strand, within ycbX
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 514,379 - uup NIAGMN_02995 0.49 +1.0 514,646 - uup NIAGMN_02995 0.63 -1.1 515,108 - uup NIAGMN_02995 0.87 +0.1 515,115 - uup NIAGMN_02995 0.87 -0.7 515,359 - -2.4 515,362 - -0.8 515,617 + rlmKL NIAGMN_03000 0.12 +1.0 516,196 - rlmKL NIAGMN_03000 0.39 +0.8 516,558 - rlmKL NIAGMN_03000 0.56 +0.8 516,775 + rlmKL NIAGMN_03000 0.67 -0.4 516,874 + rlmKL NIAGMN_03000 0.71 -2.0 517,002 - rlmKL NIAGMN_03000 0.77 +0.7 517,307 - +0.1 517,310 - -1.3 517,495 - +0.2 517,495 - +0.2 517,495 - +0.8 517,517 - +1.0 517,517 - +1.7 517,574 - -0.9 517,574 - -0.2 517,574 - -0.7 517,574 - +0.4 517,616 - -1.6 517,616 - -0.4 517,626 - -0.4 517,626 - -0.1 517,659 + +0.5 517,662 - -1.9 517,665 + -0.2 517,666 - +0.4 517,666 - -2.1 517,666 - -2.2 517,744 + +0.8 517,950 - ycbX NIAGMN_03005 0.21 +1.9 518,079 + ycbX NIAGMN_03005 0.32 -1.7 518,184 + ycbX NIAGMN_03005 0.42 +0.4 518,278 + ycbX NIAGMN_03005 0.50 +0.9 518,323 + ycbX NIAGMN_03005 0.54 +1.3 518,473 + ycbX NIAGMN_03005 0.68 +0.9
Or see this region's nucleotide sequence