Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccT and mgsA are separated by 95 nucleotides mgsA and helD are separated by 31 nucleotides helD and yccF are separated by 122 nucleotides yccF and yccS are separated by 9 nucleotides
NIAGMN_02920: yccT - DUF2057 domain-containing protein, at 497,548 to 498,210
yccT
NIAGMN_02925: mgsA - methylglyoxal synthase, at 498,306 to 498,764
mgsA
NIAGMN_02930: helD - DNA helicase IV, at 498,796 to 500,850
helD
NIAGMN_02935: yccF - YccF domain-containing protein, at 500,973 to 501,419
yccF
NIAGMN_02940: yccS - Inner membrane protein YccS, at 501,429 to 503,591
yccS
Position (kb) 498
499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 498.061 kb on - strand, within yccT at 498.094 kb on - strand, within yccT at 498.247 kb on - strand at 498.268 kb on - strand at 498.268 kb on - strand at 498.292 kb on + strand at 498.427 kb on + strand, within mgsA at 498.427 kb on + strand, within mgsA at 498.762 kb on + strand at 499.041 kb on - strand, within helD at 501.072 kb on - strand, within yccF at 501.141 kb on - strand, within yccF at 501.438 kb on - strand at 501.462 kb on + strand at 501.464 kb on + strand at 501.679 kb on + strand, within yccS at 501.706 kb on + strand, within yccS at 501.706 kb on + strand, within yccS at 501.771 kb on + strand, within yccS at 501.810 kb on + strand, within yccS at 501.815 kb on + strand, within yccS at 501.815 kb on + strand, within yccS at 501.816 kb on - strand, within yccS at 501.834 kb on + strand, within yccS at 501.834 kb on + strand, within yccS
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 498,061 - yccT NIAGMN_02920 0.77 +0.5 498,094 - yccT NIAGMN_02920 0.82 +0.4 498,247 - -1.4 498,268 - -2.0 498,268 - -1.1 498,292 + -1.0 498,427 + mgsA NIAGMN_02925 0.26 +0.2 498,427 + mgsA NIAGMN_02925 0.26 -1.8 498,762 + -0.6 499,041 - helD NIAGMN_02930 0.12 -0.8 501,072 - yccF NIAGMN_02935 0.22 +1.6 501,141 - yccF NIAGMN_02935 0.38 +3.2 501,438 - -0.3 501,462 + +1.7 501,464 + +0.9 501,679 + yccS NIAGMN_02940 0.12 +0.2 501,706 + yccS NIAGMN_02940 0.13 -0.2 501,706 + yccS NIAGMN_02940 0.13 -1.0 501,771 + yccS NIAGMN_02940 0.16 -0.6 501,810 + yccS NIAGMN_02940 0.18 -1.4 501,815 + yccS NIAGMN_02940 0.18 -0.7 501,815 + yccS NIAGMN_02940 0.18 +0.4 501,816 - yccS NIAGMN_02940 0.18 +0.9 501,834 + yccS NIAGMN_02940 0.19 +1.0 501,834 + yccS NIAGMN_02940 0.19 +0.5
Or see this region's nucleotide sequence