Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02690

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_02680 and NIAGMN_02685 are separated by 220 nucleotidesNIAGMN_02685 and NIAGMN_02690 are separated by 1 nucleotidesNIAGMN_02690 and NIAGMN_02695 are separated by 465 nucleotidesNIAGMN_02695 and tra5 are separated by 204 nucleotides NIAGMN_02680: NIAGMN_02680 - lysozyme, at 469,312 to 469,845 _02680 NIAGMN_02685: NIAGMN_02685 - hypothetical protein, at 470,066 to 470,179 _02685 NIAGMN_02690: NIAGMN_02690 - lysis protein, at 470,181 to 470,648 _02690 NIAGMN_02695: NIAGMN_02695 - PerC family transcriptional regulator, at 471,114 to 471,428 _02695 NIAGMN_02700: tra5 - IS3 family transposase, at 471,633 to 472,283 tra5 Position (kb) 470 471Strain fitness (log2 ratio) -2 -1 0 1at 469.197 kb on - strandat 469.851 kb on + strandat 469.920 kb on - strandat 470.004 kb on - strandat 470.018 kb on - strandat 470.106 kb on + strand, within NIAGMN_02685at 470.134 kb on + strand, within NIAGMN_02685at 470.181 kb on - strandat 470.334 kb on - strand, within NIAGMN_02690

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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469,197 - -2.0
469,851 + +0.2
469,920 - -1.5
470,004 - -0.4
470,018 - -0.1
470,106 + NIAGMN_02685 0.35 -0.7
470,134 + NIAGMN_02685 0.60 +1.5
470,181 - -0.2
470,334 - NIAGMN_02690 0.33 +0.5

Or see this region's nucleotide sequence