Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02670

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnu1 and NIAGMN_02670 are separated by 750 nucleotidesNIAGMN_02670 and NIAGMN_02675 are separated by 255 nucleotidesNIAGMN_02675 and NIAGMN_02680 are separated by 159 nucleotides NIAGMN_02665: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 467,392 to 467,667 nu1 NIAGMN_02670: NIAGMN_02670 - holin, at 468,418 to 468,624 _02670 NIAGMN_02675: NIAGMN_02675 - hypothetical protein, at 468,880 to 469,152 _02675 NIAGMN_02680: NIAGMN_02680 - lysozyme, at 469,312 to 469,845 _02680 Position (kb) 468 469Strain fitness (log2 ratio) -2 -1 0 1at 468.285 kb on - strandat 468.524 kb on + strand, within NIAGMN_02670at 468.622 kb on + strandat 468.853 kb on + strandat 469.039 kb on - strand, within NIAGMN_02675at 469.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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468,285 - +1.7
468,524 + NIAGMN_02670 0.51 +0.2
468,622 + +1.0
468,853 + +0.0
469,039 - NIAGMN_02675 0.58 -1.4
469,197 - -2.0

Or see this region's nucleotide sequence