Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02665

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_02650 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and nu1 are separated by 75 nucleotidesnu1 and NIAGMN_02670 are separated by 750 nucleotides NIAGMN_02650: NIAGMN_02650 - IS66-like element ISEc8 family transposase, at 465,004 to 466,542 _02650 NIAGMN_02655: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 466,592 to 466,939 tnpB NIAGMN_02660: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 466,936 to 467,316 tnpB NIAGMN_02665: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 467,392 to 467,667 nu1 NIAGMN_02670: NIAGMN_02670 - holin, at 468,418 to 468,624 _02670 Position (kb) 467 468Strain fitness (log2 ratio) -1 0 1at 468.285 kb on - strandat 468.524 kb on + strand, within NIAGMN_02670at 468.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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468,285 - +1.7
468,524 + NIAGMN_02670 0.51 +0.2
468,622 + +1.0

Or see this region's nucleotide sequence