Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rcsA and dsrB are separated by 43 nucleotides dsrB and yodD are separated by 162 nucleotides yodD and yedP are separated by 297 nucleotides
NIAGMN_02405: rcsA - transcriptional regulator RcsA, at 424,103 to 424,726
rcsA
NIAGMN_02410: dsrB - protein DsrB, at 424,770 to 424,958
dsrB
NIAGMN_02415: yodD - YodD family peroxide/acid resistance protein, at 425,121 to 425,348
yodD
NIAGMN_02425: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 425,646 to 426,461
yedP
Position (kb) 425
426 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 424.655 kb on - strand, within rcsA at 424.862 kb on - strand, within dsrB at 424.988 kb on + strand at 425.051 kb on - strand at 425.051 kb on - strand at 425.052 kb on + strand at 425.053 kb on - strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.276 kb on + strand, within yodD at 425.276 kb on + strand, within yodD at 425.277 kb on - strand, within yodD at 425.427 kb on - strand at 425.496 kb on + strand at 425.517 kb on - strand at 425.668 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.715 kb on + strand at 425.811 kb on + strand, within yedP at 425.956 kb on + strand, within yedP at 425.957 kb on - strand, within yedP at 426.040 kb on + strand, within yedP at 426.091 kb on + strand, within yedP
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 424,655 - rcsA NIAGMN_02405 0.88 -0.0 424,862 - dsrB NIAGMN_02410 0.49 +1.2 424,988 + -0.2 425,051 - -1.0 425,051 - -0.7 425,052 + +0.3 425,053 - -1.0 425,056 + -1.1 425,056 + -0.6 425,056 + +2.8 425,056 + +0.2 425,276 + yodD NIAGMN_02415 0.68 -1.5 425,276 + yodD NIAGMN_02415 0.68 +0.6 425,277 - yodD NIAGMN_02415 0.68 +1.2 425,427 - -2.0 425,496 + +0.5 425,517 - -0.5 425,668 + +0.2 425,711 + +0.3 425,711 + -1.8 425,711 + -0.4 425,711 + -0.0 425,711 + +2.4 425,711 + -0.8 425,711 + -1.0 425,715 + -0.4 425,811 + yedP NIAGMN_02425 0.20 -0.1 425,956 + yedP NIAGMN_02425 0.38 -0.4 425,957 - yedP NIAGMN_02425 0.38 +0.3 426,040 + yedP NIAGMN_02425 0.48 +3.4 426,091 + yedP NIAGMN_02425 0.55 +0.2
Or see this region's nucleotide sequence