Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01630

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsmF and yebV are separated by 117 nucleotidesyebV and yebW are separated by 20 nucleotidesyebW and pphA are separated by 0 nucleotides NIAGMN_01620: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 297,555 to 299,075 rsmF NIAGMN_01625: yebV - Uncharacterized protein YebV, at 299,193 to 299,429 yebV NIAGMN_01630: yebW - Uncharacterized protein YebW, at 299,450 to 299,725 yebW NIAGMN_01635: pphA - protein-serine/threonine phosphatase, at 299,726 to 300,382 pphA Position (kb) 299 300Strain fitness (log2 ratio) -1 0 1at 299.175 kb on + strandat 299.306 kb on + strand, within yebVat 299.307 kb on - strand, within yebVat 300.155 kb on + strand, within pphAat 300.476 kb on + strandat 300.478 kb on + strandat 300.478 kb on + strandat 300.516 kb on + strandat 300.597 kb on + strandat 300.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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299,175 + -0.0
299,306 + yebV NIAGMN_01625 0.48 -0.1
299,307 - yebV NIAGMN_01625 0.48 +0.7
300,155 + pphA NIAGMN_01635 0.65 -0.7
300,476 + +0.9
300,478 + +0.3
300,478 + -1.3
300,516 + -0.9
300,597 + +0.9
300,609 - -0.8

Or see this region's nucleotide sequence