Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntP and rlmA overlap by 4 nucleotides rlmA and cspE are separated by 165 nucleotides cspE and yebO are separated by 824 nucleotides
NIAGMN_01555: mntP - manganese efflux pump MntP, at 283,100 to 283,666
mntP
NIAGMN_01560: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 283,663 to 284,472
rlmA
NIAGMN_01565: cspE - transcription antiterminator/RNA stability regulator CspE, at 284,638 to 284,847
cspE
NIAGMN_01570: yebO - Uncharacterized protein YebO, at 285,672 to 285,959
yebO
Position (kb) 284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.668 kb on - strand at 283.888 kb on + strand, within rlmA at 284.007 kb on - strand, within rlmA at 284.029 kb on - strand, within rlmA at 284.199 kb on + strand, within rlmA at 284.415 kb on + strand at 284.417 kb on + strand at 284.611 kb on - strand at 284.644 kb on - strand at 284.788 kb on - strand, within cspE at 284.836 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.892 kb on + strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.897 kb on - strand at 284.897 kb on - strand at 284.929 kb on - strand at 284.929 kb on - strand at 284.931 kb on - strand at 284.931 kb on - strand at 284.931 kb on - strand at 285.004 kb on - strand at 285.004 kb on - strand at 285.046 kb on + strand at 285.054 kb on + strand at 285.134 kb on - strand at 285.158 kb on - strand at 285.191 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.549 kb on + strand at 285.696 kb on - strand at 285.696 kb on - strand at 285.781 kb on - strand, within yebO at 285.781 kb on - strand, within yebO
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 283,668 - -1.7 283,888 + rlmA NIAGMN_01560 0.28 +0.4 284,007 - rlmA NIAGMN_01560 0.42 -0.7 284,029 - rlmA NIAGMN_01560 0.45 -0.2 284,199 + rlmA NIAGMN_01560 0.66 +0.3 284,415 + -0.1 284,417 + +0.2 284,611 - +0.9 284,644 - -0.1 284,788 - cspE NIAGMN_01565 0.71 +0.2 284,836 - +0.2 284,888 - -0.3 284,888 - -0.7 284,888 - +0.1 284,888 - +0.8 284,892 + +1.2 284,893 - -0.4 284,893 - -0.6 284,893 - -3.1 284,893 - +2.2 284,893 - -0.1 284,893 - +0.3 284,897 - -2.8 284,897 - +1.0 284,929 - -0.6 284,929 - -0.2 284,931 - +0.1 284,931 - +0.7 284,931 - +0.9 285,004 - +0.2 285,004 - +0.6 285,046 + +0.6 285,054 + +0.2 285,134 - +0.1 285,158 - +0.9 285,191 - -0.9 285,217 - +1.3 285,217 - +1.0 285,217 - +1.6 285,217 - -0.1 285,549 + +0.4 285,696 - -0.5 285,696 - -0.2 285,781 - yebO NIAGMN_01570 0.38 +1.2 285,781 - yebO NIAGMN_01570 0.38 -0.1
Or see this region's nucleotide sequence