Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01400

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnimT and yeaO are separated by 54 nucleotidesyeaO and yoaF are separated by 21 nucleotidesyoaF and dgcP are separated by 182 nucleotides NIAGMN_01390: nimT - 2-nitroimidazole transporter, at 252,860 to 254,041 nimT NIAGMN_01395: yeaO - Uncharacterized protein YeaO, at 254,096 to 254,443 yeaO NIAGMN_01400: yoaF - DUF333 domain-containing protein, at 254,465 to 254,719 yoaF NIAGMN_01405: dgcP - Diguanylate cyclase DgcP, at 254,902 to 255,750 dgcP Position (kb) 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 253.981 kb on - strandat 254.054 kb on + strandat 254.434 kb on + strandat 254.435 kb on - strandat 254.844 kb on - strandat 255.007 kb on - strand, within dgcPat 255.058 kb on - strand, within dgcPat 255.058 kb on - strand, within dgcPat 255.358 kb on + strand, within dgcPat 255.360 kb on + strand, within dgcP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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253,981 - -1.3
254,054 + +1.4
254,434 + +0.1
254,435 - +0.2
254,844 - -1.8
255,007 - dgcP NIAGMN_01405 0.12 +2.1
255,058 - dgcP NIAGMN_01405 0.18 +1.1
255,058 - dgcP NIAGMN_01405 0.18 -0.1
255,358 + dgcP NIAGMN_01405 0.54 -0.9
255,360 + dgcP NIAGMN_01405 0.54 -3.6

Or see this region's nucleotide sequence