Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xthA and ydjX are separated by 166 nucleotides ydjX and ydjY are separated by 4 nucleotides ydjY and ydjZ are separated by 14 nucleotides ydjZ and ynjA overlap by 1 nucleotides
NIAGMN_01165: xthA - exodeoxyribonuclease III, at 207,512 to 208,318
xthA
NIAGMN_01170: ydjX - TVP38/TMEM64 family membrane protein YdjX, at 208,485 to 209,195
ydjX
NIAGMN_01175: ydjY - Uncharacterized protein YdjY, at 209,200 to 209,877
ydjY
NIAGMN_01180: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 209,892 to 210,599
ydjZ
NIAGMN_01185: ynjA - Uncharacterized protein YnjA, at 210,599 to 211,147
ynjA
Position (kb) 209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.316 kb on + strand at 208.540 kb on - strand at 208.540 kb on - strand at 208.591 kb on + strand, within ydjX at 208.914 kb on + strand, within ydjX at 209.010 kb on + strand, within ydjX at 209.454 kb on + strand, within ydjY at 209.520 kb on + strand, within ydjY at 209.621 kb on - strand, within ydjY at 209.733 kb on + strand, within ydjY at 209.767 kb on + strand, within ydjY at 209.768 kb on - strand, within ydjY at 209.773 kb on + strand, within ydjY at 209.773 kb on + strand, within ydjY at 209.876 kb on - strand at 209.923 kb on - strand at 209.926 kb on - strand at 209.931 kb on - strand at 210.046 kb on + strand, within ydjZ at 210.047 kb on - strand, within ydjZ at 210.385 kb on - strand, within ydjZ at 210.459 kb on - strand, within ydjZ at 210.681 kb on + strand, within ynjA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 208,316 + +0.2 208,540 - +0.2 208,540 - -0.3 208,591 + ydjX NIAGMN_01170 0.15 -0.6 208,914 + ydjX NIAGMN_01170 0.60 -2.4 209,010 + ydjX NIAGMN_01170 0.74 +0.9 209,454 + ydjY NIAGMN_01175 0.37 +0.2 209,520 + ydjY NIAGMN_01175 0.47 +2.2 209,621 - ydjY NIAGMN_01175 0.62 +0.8 209,733 + ydjY NIAGMN_01175 0.79 -0.5 209,767 + ydjY NIAGMN_01175 0.84 +0.2 209,768 - ydjY NIAGMN_01175 0.84 +0.4 209,773 + ydjY NIAGMN_01175 0.85 -1.0 209,773 + ydjY NIAGMN_01175 0.85 -1.9 209,876 - -0.8 209,923 - +0.9 209,926 - +2.4 209,931 - +0.3 210,046 + ydjZ NIAGMN_01180 0.22 +1.2 210,047 - ydjZ NIAGMN_01180 0.22 +1.1 210,385 - ydjZ NIAGMN_01180 0.70 +0.6 210,459 - ydjZ NIAGMN_01180 0.80 +0.4 210,681 + ynjA NIAGMN_01185 0.15 +2.2
Or see this region's nucleotide sequence