Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00860

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiM and uhpC are separated by 226 nucleotidesuhpC and ydiB are separated by 11 nucleotidesydiB and aroD are separated by 30 nucleotides NIAGMN_00855: ydiM - Inner membrane transport protein YdiM, at 146,354 to 147,568 ydiM NIAGMN_00860: uhpC - MFS transporter, at 147,795 to 149,060 uhpC NIAGMN_00865: ydiB - quinate/shikimate dehydrogenase, at 149,072 to 149,938 ydiB NIAGMN_00870: aroD - 3-dehydroquinate dehydratase, at 149,969 to 150,727 aroD Position (kb) 147 148 149 150Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 146.897 kb on - strand, within ydiMat 147.080 kb on + strand, within ydiMat 147.099 kb on + strand, within ydiMat 147.111 kb on - strand, within ydiMat 147.224 kb on - strand, within ydiMat 147.398 kb on - strand, within ydiMat 148.136 kb on + strand, within uhpCat 148.267 kb on - strand, within uhpCat 148.529 kb on + strand, within uhpCat 149.783 kb on - strand, within ydiBat 149.980 kb on - strandat 150.016 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
146,897 - ydiM NIAGMN_00855 0.45 +0.4
147,080 + ydiM NIAGMN_00855 0.60 -4.2
147,099 + ydiM NIAGMN_00855 0.61 +1.0
147,111 - ydiM NIAGMN_00855 0.62 +1.3
147,224 - ydiM NIAGMN_00855 0.72 -3.1
147,398 - ydiM NIAGMN_00855 0.86 +0.2
148,136 + uhpC NIAGMN_00860 0.27 +0.1
148,267 - uhpC NIAGMN_00860 0.37 -0.1
148,529 + uhpC NIAGMN_00860 0.58 -0.1
149,783 - ydiB NIAGMN_00865 0.82 +0.1
149,980 - -3.4
150,016 + -3.3

Or see this region's nucleotide sequence