Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00805

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsufD and sufC overlap by 26 nucleotidessufC and sufB are separated by 9 nucleotides NIAGMN_00800: sufD - Fe-S cluster assembly protein SufD, at 135,802 to 137,073 sufD NIAGMN_00805: sufC - Fe-S cluster assembly ATPase SufC, at 137,048 to 137,794 sufC NIAGMN_00810: sufB - Fe-S cluster assembly protein SufB, at 137,804 to 139,291 sufB Position (kb) 137 138Strain fitness (log2 ratio) -1 0 1at 136.189 kb on - strand, within sufDat 136.462 kb on - strand, within sufDat 136.832 kb on - strand, within sufDat 137.138 kb on + strand, within sufCat 137.139 kb on - strand, within sufCat 137.184 kb on + strand, within sufCat 137.384 kb on + strand, within sufCat 137.638 kb on - strand, within sufCat 138.014 kb on - strand, within sufBat 138.507 kb on + strand, within sufBat 138.552 kb on + strand, within sufBat 138.749 kb on - strand, within sufB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
136,189 - sufD NIAGMN_00800 0.30 +0.6
136,462 - sufD NIAGMN_00800 0.52 +0.3
136,832 - sufD NIAGMN_00800 0.81 +0.5
137,138 + sufC NIAGMN_00805 0.12 +0.6
137,139 - sufC NIAGMN_00805 0.12 +1.5
137,184 + sufC NIAGMN_00805 0.18 -0.6
137,384 + sufC NIAGMN_00805 0.45 +0.2
137,638 - sufC NIAGMN_00805 0.79 -0.1
138,014 - sufB NIAGMN_00810 0.14 -1.6
138,507 + sufB NIAGMN_00810 0.47 +0.7
138,552 + sufB NIAGMN_00810 0.50 +1.3
138,749 - sufB NIAGMN_00810 0.64 -1.1

Or see this region's nucleotide sequence