Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00660

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmepH and sodB are separated by 127 nucleotidessodB and ydhP are separated by 145 nucleotides NIAGMN_00655: mepH - peptidoglycan DD-endopeptidase MepH, at 109,733 to 110,548 mepH NIAGMN_00660: sodB - superoxide dismutase [Fe], at 110,676 to 111,257 sodB NIAGMN_00665: ydhP - Inner membrane transport protein YdhP, at 111,403 to 112,572 ydhP Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1at 110.170 kb on + strand, within mepHat 110.341 kb on + strand, within mepHat 110.490 kb on - strandat 110.637 kb on + strandat 110.646 kb on + strandat 110.698 kb on + strandat 110.752 kb on - strand, within sodBat 110.787 kb on - strand, within sodBat 111.688 kb on - strand, within ydhPat 111.691 kb on - strand, within ydhPat 111.736 kb on - strand, within ydhPat 111.736 kb on - strand, within ydhPat 111.810 kb on - strand, within ydhPat 111.882 kb on + strand, within ydhPat 111.904 kb on - strand, within ydhPat 111.912 kb on - strand, within ydhP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
110,170 + mepH NIAGMN_00655 0.54 +0.5
110,341 + mepH NIAGMN_00655 0.75 +1.1
110,490 - +0.6
110,637 + +0.7
110,646 + +1.7
110,698 + +0.7
110,752 - sodB NIAGMN_00660 0.13 -1.3
110,787 - sodB NIAGMN_00660 0.19 -0.7
111,688 - ydhP NIAGMN_00665 0.24 +0.7
111,691 - ydhP NIAGMN_00665 0.25 +0.7
111,736 - ydhP NIAGMN_00665 0.28 -0.9
111,736 - ydhP NIAGMN_00665 0.28 -0.3
111,810 - ydhP NIAGMN_00665 0.35 -1.5
111,882 + ydhP NIAGMN_00665 0.41 -0.6
111,904 - ydhP NIAGMN_00665 0.43 +0.3
111,912 - ydhP NIAGMN_00665 0.44 -0.3

Or see this region's nucleotide sequence