Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00445

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgA and NIAGMN_00445 are separated by 44 nucleotidesNIAGMN_00445 and uidC are separated by 14 nucleotides NIAGMN_00440: ydgA - Protein YdgA, at 67,931 to 69,439 ydgA NIAGMN_00445: NIAGMN_00445 - Putative outer membrane porin protein, at 69,484 to 69,705 _00445 NIAGMN_00450: uidC - glucuronide uptake porin UidC, at 69,720 to 70,748 uidC Position (kb) 69 70Strain fitness (log2 ratio) -1 0 1at 68.495 kb on - strand, within ydgAat 68.872 kb on + strand, within ydgAat 69.437 kb on + strandat 70.272 kb on + strand, within uidCat 70.332 kb on - strand, within uidC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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68,495 - ydgA NIAGMN_00440 0.37 -0.9
68,872 + ydgA NIAGMN_00440 0.62 -0.8
69,437 + -1.1
70,272 + uidC NIAGMN_00450 0.54 +0.7
70,332 - uidC NIAGMN_00450 0.59 +0.1

Or see this region's nucleotide sequence