Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00435

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfumB and manA are separated by 198 nucleotidesmanA and ydgA are separated by 100 nucleotides NIAGMN_00430: fumB - class I fumarate hydratase, at 64,810 to 66,456 fumB NIAGMN_00435: manA - mannose-6-phosphate isomerase, at 66,655 to 67,830 manA NIAGMN_00440: ydgA - Protein YdgA, at 67,931 to 69,439 ydgA Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.699 kb on + strand, within fumBat 65.998 kb on - strand, within fumBat 66.031 kb on - strand, within fumBat 66.203 kb on + strand, within fumBat 66.317 kb on - strandat 66.370 kb on - strandat 66.393 kb on - strandat 66.402 kb on + strandat 66.403 kb on - strandat 67.026 kb on + strand, within manAat 67.870 kb on + strandat 67.878 kb on + strandat 68.495 kb on - strand, within ydgA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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65,699 + fumB NIAGMN_00430 0.54 +1.3
65,998 - fumB NIAGMN_00430 0.72 -2.2
66,031 - fumB NIAGMN_00430 0.74 +0.9
66,203 + fumB NIAGMN_00430 0.85 +1.1
66,317 - -0.8
66,370 - -2.1
66,393 - -1.3
66,402 + -0.3
66,403 - -1.2
67,026 + manA NIAGMN_00435 0.32 -0.6
67,870 + +3.5
67,878 + +1.0
68,495 - ydgA NIAGMN_00440 0.37 -0.9

Or see this region's nucleotide sequence