Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00430

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfumC and fumB are separated by 142 nucleotidesfumB and manA are separated by 198 nucleotides NIAGMN_00425: fumC - class II fumarate hydratase, at 63,264 to 64,667 fumC NIAGMN_00430: fumB - class I fumarate hydratase, at 64,810 to 66,456 fumB NIAGMN_00435: manA - mannose-6-phosphate isomerase, at 66,655 to 67,830 manA Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1at 64.019 kb on - strand, within fumCat 64.656 kb on + strandat 64.661 kb on + strandat 64.812 kb on - strandat 64.844 kb on - strandat 64.844 kb on - strandat 64.966 kb on - strandat 64.966 kb on - strandat 64.966 kb on - strandat 65.165 kb on + strand, within fumBat 65.436 kb on + strand, within fumBat 65.699 kb on + strand, within fumBat 65.998 kb on - strand, within fumBat 66.031 kb on - strand, within fumBat 66.203 kb on + strand, within fumBat 66.317 kb on - strandat 66.370 kb on - strandat 66.393 kb on - strandat 66.402 kb on + strandat 66.403 kb on - strandat 67.026 kb on + strand, within manA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
64,019 - fumC NIAGMN_00425 0.54 +0.2
64,656 + -2.6
64,661 + -1.8
64,812 - -1.2
64,844 - +1.6
64,844 - -1.6
64,966 - +1.2
64,966 - -0.2
64,966 - +0.2
65,165 + fumB NIAGMN_00430 0.22 -1.4
65,436 + fumB NIAGMN_00430 0.38 -0.5
65,699 + fumB NIAGMN_00430 0.54 +1.3
65,998 - fumB NIAGMN_00430 0.72 -2.2
66,031 - fumB NIAGMN_00430 0.74 +0.9
66,203 + fumB NIAGMN_00430 0.85 +1.1
66,317 - -0.8
66,370 - -2.1
66,393 - -1.3
66,402 + -0.3
66,403 - -1.2
67,026 + manA NIAGMN_00435 0.32 -0.6

Or see this region's nucleotide sequence