Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00230

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntparE and NIAGMN_00225 are separated by 295 nucleotidesNIAGMN_00225 and NIAGMN_00230 are separated by 71 nucleotidesNIAGMN_00230 and NIAGMN_00235 are separated by 3 nucleotidesNIAGMN_00235 and dicB are separated by 400 nucleotidesdicB and NIAGMN_00250 overlap by 4 nucleotides NIAGMN_00220: parE - plasmid stabilization protein ParE, at 27,385 to 27,663 parE NIAGMN_00225: NIAGMN_00225 - hypothetical protein, at 27,959 to 28,315 _00225 NIAGMN_00230: NIAGMN_00230 - Uncharacterized protein YdfC, at 28,387 to 28,605 _00230 NIAGMN_00235: NIAGMN_00235 - hypothetical protein, at 28,609 to 28,773 _00235 NIAGMN_00245: dicB - Division inhibition protein DicB, at 29,174 to 29,362 dicB NIAGMN_00250: NIAGMN_00250 - DUF1482 domain-containing protein, at 29,359 to 29,550 _00250 Position (kb) 28 29Strain fitness (log2 ratio) -1 0 1 2at 27.425 kb on + strand, within parEat 27.432 kb on + strand, within parEat 27.434 kb on + strand, within parEat 27.527 kb on - strand, within parE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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27,425 + parE NIAGMN_00220 0.14 -0.9
27,432 + parE NIAGMN_00220 0.17 -0.7
27,434 + parE NIAGMN_00220 0.18 -0.2
27,527 - parE NIAGMN_00220 0.51 +1.9

Or see this region's nucleotide sequence