Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_00185 and dnaC are separated by 126 nucleotides dnaC and NIAGMN_00195 are separated by 6 nucleotides NIAGMN_00195 and NIAGMN_00200 are separated by 22 nucleotides NIAGMN_00200 and ydaS overlap by 4 nucleotides ydaS and NIAGMN_00210 are separated by 97 nucleotides
NIAGMN_00185: NIAGMN_00185 - DUF1627 domain-containing protein, at 23,451 to 24,119
_00185
NIAGMN_00190: dnaC - DNA replication protein DnaC, at 24,246 to 24,986
dnaC
NIAGMN_00195: NIAGMN_00195 - DNA-binding protein, at 24,993 to 25,955
_00195
NIAGMN_00200: NIAGMN_00200 - Rha family transcriptional regulator, at 25,978 to 26,403
_00200
NIAGMN_00205: ydaS - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 26,400 to 26,702
ydaS
NIAGMN_00210: NIAGMN_00210 - Cro/Cl family transcriptional regulator, at 26,800 to 27,171
_00210
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 24.128 kb on - strand at 24.252 kb on - strand at 24.324 kb on - strand, within dnaC at 24.396 kb on - strand, within dnaC at 24.663 kb on - strand, within dnaC at 25.292 kb on - strand, within NIAGMN_00195 at 25.641 kb on - strand, within NIAGMN_00195 at 26.455 kb on - strand, within ydaS at 26.501 kb on + strand, within ydaS at 26.502 kb on - strand, within ydaS at 26.568 kb on - strand, within ydaS at 26.587 kb on - strand, within ydaS at 26.588 kb on + strand, within ydaS at 26.589 kb on - strand, within ydaS at 26.589 kb on - strand, within ydaS at 26.620 kb on + strand, within ydaS at 26.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 24,128 - +1.2 24,252 - +0.3 24,324 - dnaC NIAGMN_00190 0.11 -0.3 24,396 - dnaC NIAGMN_00190 0.20 -1.8 24,663 - dnaC NIAGMN_00190 0.56 +1.6 25,292 - NIAGMN_00195 0.31 -0.2 25,641 - NIAGMN_00195 0.67 -0.3 26,455 - ydaS NIAGMN_00205 0.18 -0.3 26,501 + ydaS NIAGMN_00205 0.33 -0.7 26,502 - ydaS NIAGMN_00205 0.34 +0.2 26,568 - ydaS NIAGMN_00205 0.55 -0.9 26,587 - ydaS NIAGMN_00205 0.62 -0.3 26,588 + ydaS NIAGMN_00205 0.62 -1.5 26,589 - ydaS NIAGMN_00205 0.62 -1.2 26,589 - ydaS NIAGMN_00205 0.62 +0.0 26,620 + ydaS NIAGMN_00205 0.73 +1.1 26,703 - -1.5
Or see this region's nucleotide sequence