Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_00165 and NIAGMN_00170 overlap by 12 nucleotides NIAGMN_00170 and NIAGMN_00175 are separated by 115 nucleotides NIAGMN_00175 and NIAGMN_00180 are separated by 56 nucleotides NIAGMN_00180 and NIAGMN_00185 are separated by 15 nucleotides NIAGMN_00185 and dnaC are separated by 126 nucleotides
NIAGMN_00165: NIAGMN_00165 - hypothetical protein, at 22,035 to 22,190
_00165
NIAGMN_00170: NIAGMN_00170 - hypothetical protein, at 22,179 to 22,283
_00170
NIAGMN_00175: NIAGMN_00175 - DUF551 domain-containing protein, at 22,399 to 22,983
_00175
NIAGMN_00180: NIAGMN_00180 - DUF977 domain-containing protein, at 23,040 to 23,435
_00180
NIAGMN_00185: NIAGMN_00185 - DUF1627 domain-containing protein, at 23,451 to 24,119
_00185
NIAGMN_00190: dnaC - DNA replication protein DnaC, at 24,246 to 24,986
dnaC
Position (kb) 23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 22.733 kb on - strand, within NIAGMN_00175 at 22.745 kb on - strand, within NIAGMN_00175 at 22.972 kb on - strand at 23.029 kb on - strand at 23.790 kb on + strand, within NIAGMN_00185 at 23.823 kb on - strand, within NIAGMN_00185 at 24.128 kb on - strand at 24.252 kb on - strand at 24.324 kb on - strand, within dnaC at 24.396 kb on - strand, within dnaC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 22,733 - NIAGMN_00175 0.57 -0.9 22,745 - NIAGMN_00175 0.59 +0.7 22,972 - +0.7 23,029 - +0.2 23,790 + NIAGMN_00185 0.51 +0.2 23,823 - NIAGMN_00185 0.56 +0.3 24,128 - +1.2 24,252 - +0.3 24,324 - dnaC NIAGMN_00190 0.11 -0.3 24,396 - dnaC NIAGMN_00190 0.20 -1.8
Or see this region's nucleotide sequence