Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00170

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_00150 and NIAGMN_00155 are separated by 447 nucleotidesNIAGMN_00155 and NIAGMN_00165 are separated by 44 nucleotidesNIAGMN_00165 and NIAGMN_00170 overlap by 12 nucleotidesNIAGMN_00170 and NIAGMN_00175 are separated by 115 nucleotidesNIAGMN_00175 and NIAGMN_00180 are separated by 56 nucleotides NIAGMN_00150: NIAGMN_00150 - DUF968 domain-containing protein, at 20,281 to 21,330 _00150 NIAGMN_00155: NIAGMN_00155 - protein hokC, at 21,778 to 21,990 _00155 NIAGMN_00165: NIAGMN_00165 - hypothetical protein, at 22,035 to 22,190 _00165 NIAGMN_00170: NIAGMN_00170 - hypothetical protein, at 22,179 to 22,283 _00170 NIAGMN_00175: NIAGMN_00175 - DUF551 domain-containing protein, at 22,399 to 22,983 _00175 NIAGMN_00180: NIAGMN_00180 - DUF977 domain-containing protein, at 23,040 to 23,435 _00180 Position (kb) 22 23Strain fitness (log2 ratio) -1 0 1at 21.780 kb on - strandat 21.780 kb on - strandat 21.911 kb on - strand, within NIAGMN_00155at 22.733 kb on - strand, within NIAGMN_00175at 22.745 kb on - strand, within NIAGMN_00175at 22.972 kb on - strandat 23.029 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
21,780 - +0.9
21,780 - -1.2
21,911 - NIAGMN_00155 0.62 +0.2
22,733 - NIAGMN_00175 0.57 -0.9
22,745 - NIAGMN_00175 0.59 +0.7
22,972 - +0.7
23,029 - +0.2

Or see this region's nucleotide sequence