Strain Fitness in Escherichia coli ECRC101 around MCAODC_27915

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemB and tauD are separated by 106 nucleotidestauD and tauC overlap by 4 nucleotidestauC and tauB overlap by 4 nucleotides MCAODC_27910: hemB - porphobilinogen synthase, at 2,329,740 to 2,330,714 hemB MCAODC_27915: tauD - taurine dioxygenase, at 2,330,821 to 2,331,672 tauD MCAODC_27920: tauC - taurine ABC transporter permease TauC, at 2,331,669 to 2,332,496 tauC MCAODC_27925: tauB - taurine ABC transporter ATP-binding subunit, at 2,332,493 to 2,333,260 tauB Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2330.742 kb on + strandat 2330.742 kb on + strandat 2330.743 kb on - strandat 2330.743 kb on - strandat 2330.820 kb on - strandat 2330.822 kb on + strandat 2330.872 kb on - strandat 2330.872 kb on - strandat 2330.906 kb on + strandat 2330.983 kb on - strand, within tauDat 2331.054 kb on + strand, within tauDat 2331.054 kb on + strand, within tauDat 2331.118 kb on + strand, within tauDat 2331.119 kb on - strand, within tauDat 2331.119 kb on - strand, within tauDat 2331.119 kb on - strand, within tauDat 2331.119 kb on - strand, within tauDat 2331.119 kb on - strand, within tauDat 2331.189 kb on - strand, within tauDat 2331.269 kb on + strand, within tauDat 2331.269 kb on + strand, within tauDat 2331.270 kb on - strand, within tauDat 2331.270 kb on - strand, within tauDat 2331.361 kb on - strand, within tauDat 2331.375 kb on + strand, within tauDat 2331.402 kb on + strand, within tauDat 2331.567 kb on - strand, within tauDat 2331.635 kb on + strandat 2331.675 kb on + strandat 2331.676 kb on - strandat 2331.729 kb on + strandat 2331.730 kb on - strandat 2331.812 kb on + strand, within tauCat 2331.812 kb on + strand, within tauCat 2331.813 kb on - strand, within tauCat 2331.813 kb on - strand, within tauCat 2331.884 kb on + strand, within tauCat 2331.884 kb on + strand, within tauCat 2331.884 kb on + strand, within tauCat 2331.884 kb on + strand, within tauCat 2331.885 kb on - strand, within tauCat 2331.889 kb on - strand, within tauCat 2332.048 kb on + strand, within tauCat 2332.048 kb on + strand, within tauCat 2332.049 kb on - strand, within tauCat 2332.049 kb on - strand, within tauCat 2332.057 kb on - strand, within tauCat 2332.079 kb on + strand, within tauCat 2332.080 kb on - strand, within tauCat 2332.225 kb on - strand, within tauCat 2332.323 kb on + strand, within tauCat 2332.324 kb on - strand, within tauCat 2332.355 kb on + strand, within tauCat 2332.386 kb on + strand, within tauCat 2332.387 kb on - strand, within tauCat 2332.387 kb on - strand, within tauCat 2332.387 kb on - strand, within tauCat 2332.395 kb on + strand, within tauCat 2332.396 kb on - strand, within tauCat 2332.396 kb on - strand, within tauCat 2332.419 kb on + strandat 2332.420 kb on - strandat 2332.520 kb on + strandat 2332.529 kb on + strandat 2332.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,330,742 + +0.5
2,330,742 + +0.8
2,330,743 - +3.1
2,330,743 - +0.4
2,330,820 - -0.6
2,330,822 + +0.7
2,330,872 - +1.2
2,330,872 - +0.2
2,330,906 + +3.2
2,330,983 - tauD MCAODC_27915 0.19 +0.6
2,331,054 + tauD MCAODC_27915 0.27 -0.4
2,331,054 + tauD MCAODC_27915 0.27 -0.5
2,331,118 + tauD MCAODC_27915 0.35 +0.0
2,331,119 - tauD MCAODC_27915 0.35 +0.2
2,331,119 - tauD MCAODC_27915 0.35 +0.7
2,331,119 - tauD MCAODC_27915 0.35 -0.8
2,331,119 - tauD MCAODC_27915 0.35 +0.3
2,331,119 - tauD MCAODC_27915 0.35 +0.0
2,331,189 - tauD MCAODC_27915 0.43 -0.8
2,331,269 + tauD MCAODC_27915 0.53 +0.5
2,331,269 + tauD MCAODC_27915 0.53 -2.8
2,331,270 - tauD MCAODC_27915 0.53 +0.1
2,331,270 - tauD MCAODC_27915 0.53 -2.1
2,331,361 - tauD MCAODC_27915 0.63 +1.8
2,331,375 + tauD MCAODC_27915 0.65 -2.1
2,331,402 + tauD MCAODC_27915 0.68 -0.7
2,331,567 - tauD MCAODC_27915 0.88 -0.3
2,331,635 + -0.2
2,331,675 + -0.3
2,331,676 - -0.2
2,331,729 + -2.2
2,331,730 - +0.1
2,331,812 + tauC MCAODC_27920 0.17 -1.2
2,331,812 + tauC MCAODC_27920 0.17 -2.5
2,331,813 - tauC MCAODC_27920 0.17 +1.1
2,331,813 - tauC MCAODC_27920 0.17 +0.3
2,331,884 + tauC MCAODC_27920 0.26 +0.3
2,331,884 + tauC MCAODC_27920 0.26 -0.1
2,331,884 + tauC MCAODC_27920 0.26 +0.2
2,331,884 + tauC MCAODC_27920 0.26 -3.3
2,331,885 - tauC MCAODC_27920 0.26 -0.1
2,331,889 - tauC MCAODC_27920 0.27 +0.0
2,332,048 + tauC MCAODC_27920 0.46 +1.5
2,332,048 + tauC MCAODC_27920 0.46 +0.1
2,332,049 - tauC MCAODC_27920 0.46 -0.4
2,332,049 - tauC MCAODC_27920 0.46 -0.8
2,332,057 - tauC MCAODC_27920 0.47 -0.3
2,332,079 + tauC MCAODC_27920 0.50 -0.7
2,332,080 - tauC MCAODC_27920 0.50 +0.8
2,332,225 - tauC MCAODC_27920 0.67 -0.2
2,332,323 + tauC MCAODC_27920 0.79 +0.2
2,332,324 - tauC MCAODC_27920 0.79 +0.3
2,332,355 + tauC MCAODC_27920 0.83 -0.2
2,332,386 + tauC MCAODC_27920 0.87 -3.2
2,332,387 - tauC MCAODC_27920 0.87 +0.1
2,332,387 - tauC MCAODC_27920 0.87 +1.2
2,332,387 - tauC MCAODC_27920 0.87 -0.8
2,332,395 + tauC MCAODC_27920 0.88 -0.2
2,332,396 - tauC MCAODC_27920 0.88 -0.4
2,332,396 - tauC MCAODC_27920 0.88 +2.0
2,332,419 + -0.0
2,332,420 - +0.6
2,332,520 + +1.0
2,332,529 + +0.6
2,332,530 - +0.3

Or see this region's nucleotide sequence