Strain Fitness in Escherichia coli ECRC101 around MCAODC_27020

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsfmD and fimC are separated by 30 nucleotidesfimC and fimA are separated by 219 nucleotidesfimA and MCAODC_27025 are separated by 479 nucleotides MCAODC_27010: sfmD - Outer membrane usher protein SfmD, at 2,126,034 to 2,128,643 sfmD MCAODC_27015: fimC - type 1 fimbria chaperone FimC, at 2,128,674 to 2,129,366 fimC MCAODC_27020: fimA - type 1 fimbrial major subunit FimA, at 2,129,586 to 2,130,128 fimA MCAODC_27025: MCAODC_27025 - Bifunctional protein FolD, at 2,130,608 to 2,131,474 _27025 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2128.604 kb on + strandat 2128.604 kb on + strandat 2128.628 kb on + strandat 2128.657 kb on - strandat 2128.827 kb on + strand, within fimCat 2128.827 kb on + strand, within fimCat 2128.846 kb on + strand, within fimCat 2128.847 kb on - strand, within fimCat 2128.862 kb on + strand, within fimCat 2128.877 kb on - strand, within fimCat 2129.091 kb on - strand, within fimCat 2129.219 kb on + strand, within fimCat 2129.220 kb on - strand, within fimCat 2129.502 kb on - strandat 2129.560 kb on + strandat 2129.659 kb on + strand, within fimAat 2129.793 kb on - strand, within fimAat 2129.931 kb on - strand, within fimAat 2129.996 kb on + strand, within fimAat 2130.199 kb on + strandat 2130.205 kb on + strandat 2130.359 kb on + strandat 2130.581 kb on + strandat 2130.581 kb on + strandat 2130.585 kb on + strandat 2130.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,128,604 + +0.8
2,128,604 + +0.2
2,128,628 + -0.2
2,128,657 - -0.3
2,128,827 + fimC MCAODC_27015 0.22 +0.3
2,128,827 + fimC MCAODC_27015 0.22 -1.8
2,128,846 + fimC MCAODC_27015 0.25 +0.5
2,128,847 - fimC MCAODC_27015 0.25 +0.8
2,128,862 + fimC MCAODC_27015 0.27 +2.8
2,128,877 - fimC MCAODC_27015 0.29 -1.0
2,129,091 - fimC MCAODC_27015 0.60 +0.8
2,129,219 + fimC MCAODC_27015 0.79 -2.1
2,129,220 - fimC MCAODC_27015 0.79 -0.3
2,129,502 - -0.0
2,129,560 + +0.6
2,129,659 + fimA MCAODC_27020 0.13 -0.9
2,129,793 - fimA MCAODC_27020 0.38 +0.9
2,129,931 - fimA MCAODC_27020 0.64 +2.6
2,129,996 + fimA MCAODC_27020 0.76 -0.3
2,130,199 + -0.1
2,130,205 + +0.6
2,130,359 + +0.3
2,130,581 + -3.0
2,130,581 + -2.8
2,130,585 + -0.1
2,130,585 + -1.4

Or see this region's nucleotide sequence